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5FFG
Asym. Unit
Info
Asym.Unit (300 KB)
Biol.Unit 1 (291 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INTEGRIN ALPHA V BETA 6 HEAD
Authors
:
X. Dong, T. A. Springer
Date
:
18 Dec 15 (Deposition) - 25 Jan 17 (Release) - 15 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Integrin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Dong, B. Zhao, R. E. Iacob, J. Zhu, A. C. Koksal, C. Lu, J. R. Engen, T. A. Springer
Force Interacts With Macromolecular Structure In Activation Of Tgf-Beta.
Nature V. 542 55 2017
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Hetero Components
(7, 34)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
7a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
6
Ligand/Ion
CALCIUM ION
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292 , HOH A:2109
binding site for residue CA A 2001
02
AC2
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357 , HOH A:2127
binding site for residue CA A 2002
03
AC3
SOFTWARE
ASP A:414 , ASP A:416 , ASN A:418 , TYR A:420 , ASP A:422 , HOH A:2117
binding site for residue CA A 2003
04
AC4
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238 , HOH A:2102
binding site for residue CA A 2004
05
AC5
SOFTWARE
ARG A:510 , PRO A:520
binding site for residue SO4 A 2028
06
AC6
SOFTWARE
LYS A:506 , GLY A:507 , ILE A:509 , ARG A:518 , GLU A:548 , PHE A:549 , ARG A:550 , ASP A:551
binding site for residue MES A 2029
07
AC7
SOFTWARE
TYR A:516 , SER A:517 , HIS A:522 , LEU A:539
binding site for residue PEG A 2030
08
AC8
SOFTWARE
SER B:127 , ASP B:130 , ASP B:131 , LYS B:338 , HOH B:2120 , HOH B:2165
binding site for residue CA B 2001
09
AC9
SOFTWARE
ASP B:123 , SER B:125 , SER B:127 , GLU B:223 , ASP B:254 , HOH B:2123
binding site for residue CA B 2002
10
AD1
SOFTWARE
ASP A:83 , ASP A:84 , GLN A:120 , GLN B:315
binding site for residue PEG B 2004
11
AD2
SOFTWARE
GLU A:15 , GLY A:16 , LYS A:42 , ASN A:44 , GLU A:52 , GLY A:466 , HOH A:2101
binding site for Poly-Saccharide residues NAG A 2005 through NAG A 2006 bound to ASN A 44
12
AD3
SOFTWARE
ASN A:232 , ASP A:234 , ASP A:257 , LYS A:259 , ASN A:260 , HOH A:2195
binding site for Poly-Saccharide residues NAG A 2007 through BMA A 2009 bound to ASN A 260
13
AD4
SOFTWARE
ALA A:213 , GLN A:214 , PHE A:217 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266 , HOH A:2159 , HOH A:2227 , GLU B:237
binding site for Poly-Saccharide residues NAG A 2010 through MAN A 2015 bound to ASN A 266
14
AD5
SOFTWARE
SER A:193 , ASP A:196 , ASN A:459 , THR A:461 , CYS A:473
binding site for Poly-Saccharide residues NAG A 2016 through BMA A 2018 bound to ASN A 459
15
AD6
SOFTWARE
ASP A:6 , ARG A:439 , ASN A:525 , ARG A:563 , ARG A:567 , NAG A:2027 , HOH A:2114 , HOH A:2155 , HOH A:2208
binding site for Poly-Saccharide residues NAG A 2019 through MAN A 2026 bound to ASN A 525
16
AD7
SOFTWARE
PHE A:559 , PRO A:584 , ASN A:586 , MAN A:2026
binding site for Mono-Saccharide NAG A 2027 bound to ASN A 586
17
AD8
SOFTWARE
ASN B:243
binding site for Mono-Saccharide NAG B 2003 bound to ASN B 243
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (300 KB)
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