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5FF4
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
HYDE FROM T. MARITIMA IN COMPLEX WITH (2R,4R)-TMETDA
Authors
:
R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berte J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Date
:
17 Dec 15 (Deposition) - 06 Apr 16 (Release) - 04 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Radical Sam Enzyme, Complex, Fefe-Hydrogenase Maturase, Thiazolidine, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berteau, J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Carbon-Sulfur Bond-Forming Reaction Catalysed By The Radica Sam Enzyme Hyde.
Nat. Chem. V. 8 491 2016
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Hetero Components
(6, 11)
Info
All Hetero Components
1a: (2~{R},4~{R})-2,5,5-TRIMETHYL-1,3-... (5ZZa)
2a: CHLORIDE ION (CLa)
3a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
3b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
3c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
3d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
3e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
4a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
5a: SELENIUM ATOM (SEa)
5b: SELENIUM ATOM (SEb)
6a: FE4-SE4 CLUSTER (SFSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5ZZ
1
Ligand/Ion
(2~{R},4~{R})-2,5,5-TRIMETHYL-1,3-THIAZOLIDINE-2,4-DICARBOXYLIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
CPS
5
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
4
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
5
SE
2
Ligand/Ion
SELENIUM ATOM
6
SFS
1
Ligand/Ion
FE4-SE4 CLUSTER
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:63 , CYS A:67 , CYS A:70 , ARG A:73 , SAH A:408
binding site for residue SFS A 401
02
AC2
SOFTWARE
GLN A:98 , PHE A:99 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , CPS A:405 , CPS A:406 , HOH A:614 , HOH A:642 , HOH A:650 , HOH A:703 , HOH A:742 , HOH A:802 , HOH A:962
binding site for residue CPS A 402
03
AC3
SOFTWARE
LYS A:37 , ASP A:40 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , HOH A:562 , HOH A:582 , HOH A:618 , HOH A:660 , HOH A:738 , HOH A:911
binding site for residue CPS A 403
04
AC4
SOFTWARE
ARG A:29 , GLU A:33 , PHE A:246 , THR A:247 , LEU A:250 , CPS A:405 , HOH A:667 , HOH A:684 , HOH A:702 , HOH A:995
binding site for residue CPS A 404
05
AC5
SOFTWARE
ARG A:29 , GLU A:314 , LYS A:315 , THR A:317 , ALA A:318 , CPS A:402 , CPS A:404 , CPS A:406 , HOH A:525 , HOH A:546 , HOH A:573 , HOH A:681 , HOH A:720 , HOH A:998
binding site for residue CPS A 405
06
AC6
SOFTWARE
LYS A:128 , PRO A:321 , MET A:324 , LYS A:325 , GLU A:328 , CPS A:402 , CPS A:405 , HOH A:501 , HOH A:668 , HOH A:695 , HOH A:805 , HOH A:809 , HOH A:912 , HOH A:965 , HOH A:992 , HOH A:1002
binding site for residue CPS A 406
07
AC7
SOFTWARE
ARG A:54 , THR A:134 , ARG A:155
binding site for residue CL A 407
08
AC8
SOFTWARE
TYR A:69 , SER A:108 , SER A:136 , ARG A:159 , GLU A:161 , ARG A:180 , MET A:199 , PRO A:229 , ILE A:231 , TYR A:303 , LEU A:305 , TYR A:306 , SFS A:401 , 5ZZ A:409 , HOH A:580 , HOH A:590 , HOH A:603 , HOH A:741
binding site for residue SAH A 408
09
AC9
SOFTWARE
ILE A:56 , GLN A:107 , ARG A:159 , GLY A:226 , THR A:268 , THR A:269 , ALA A:270 , MET A:291 , LEU A:305 , TYR A:306 , SAH A:408 , HOH A:606 , HOH A:693 , HOH A:723 , HOH A:752 , HOH A:762
binding site for residue 5ZZ A 409
10
AD1
SOFTWARE
TRP A:140 , TYR A:145 , CYS A:183 , SE A:411 , HOH A:785
binding site for residue SE A 410
11
AD2
SOFTWARE
TRP A:140 , TYR A:145 , CYS A:183 , SE A:410
binding site for residue SE A 411
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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