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5FF1
Biol. Unit 1
Info
Asym.Unit (225 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
TWO WAY MODE OF BINDING OF ANTITHYROID DRUG METHIMAZOLE TO MAMMALIAN HEME PEROXIDASES: STRUCTURE OF THE COMPLEX OF LACTOPEROXIDASE WITH METHIMAZOLE AT 1.97 ANGSTROM RESOLUTION
Authors
:
R. P. Singh, A. Singh, H. Sirohi, A. K. Singh, P. Kaur, S. Sharma, T. P. Sin
Date
:
17 Dec 15 (Deposition) - 13 Jan 16 (Release) - 27 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Inhibitor, Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, H. V. Sirohi, A. K. Singh, P. Kaur, S. Sharma, T. P. Singh
Dual Binding Mode Of Antithyroid Drug Methimazole To Mammalian Heme Peroxidases - Structural Determination Of Th Lactoperoxidase-Methimazole Complex At 1. 97 Angstrom Resolution.
Febs Open Bio V. 6 640 2016
[
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZa)
4b: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZb)
4c: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZc)
4d: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6a: NITRATE ION (NO3a)
6b: NITRATE ION (NO3b)
6c: NITRATE ION (NO3c)
6d: NITRATE ION (NO3d)
6e: NITRATE ION (NO3e)
6f: NITRATE ION (NO3f)
6g: NITRATE ION (NO3g)
6h: NITRATE ION (NO3h)
6i: NITRATE ION (NO3i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MMZ
2
Ligand/Ion
1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NO3
5
Ligand/Ion
NITRATE ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AE4 (SOFTWARE)
13: AE5 (SOFTWARE)
14: AE6 (SOFTWARE)
15: AE7 (SOFTWARE)
16: AF3 (SOFTWARE)
17: AF4 (SOFTWARE)
18: AF5 (SOFTWARE)
19: AF6 (SOFTWARE)
20: AF7 (SOFTWARE)
21: AF8 (SOFTWARE)
22: AF9 (SOFTWARE)
23: AG1 (SOFTWARE)
24: AG2 (SOFTWARE)
25: AG3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , GLN A:423 , ILE A:436 , ARG A:440 , MMZ A:601 , MMZ A:602 , HOH A:703 , HOH A:817
binding site for residue HEM A 607
02
AC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
binding site for residue CA A 608
03
AC3
SOFTWARE
ALA A:44 , ARG A:45 , TRP A:46 , LEU A:47 , SER A:340 , ASN A:341 , VAL A:342 , MET A:446 , TRP A:452 , HOH A:802
binding site for residue NO3 A 609
04
AC4
SOFTWARE
ASN A:241 , THR A:242 , THR A:243 , HOH A:858
binding site for residue NO3 A 610
05
AC5
SOFTWARE
LEU A:92 , LYS A:402 , ASN A:403 , HOH A:779 , HOH A:820 , HOH A:979
binding site for residue NO3 A 611
06
AC6
SOFTWARE
ILE A:306 , PHE A:309 , ARG A:310 , TRP A:529 , TRP A:530 , GLU A:531
binding site for residue NO3 A 612
07
AC7
SOFTWARE
ASN A:408 , ASN A:410 , LYS A:411
binding site for residue NO3 A 613
08
AC8
SOFTWARE
GLU A:52 , PHE A:59 , GLY A:60 , TRP A:61 , THR A:62 , LYS A:65 , ARG A:71 , VAL A:72
binding site for residue GOL A 614
09
AC9
SOFTWARE
GLU A:52 , LYS A:65 , THR A:66 , HOH A:708
binding site for residue GOL A 615
10
AD1
SOFTWARE
ALA A:56 , TRP A:61 , ASP A:137 , ARG A:162 , HOH A:755
binding site for residue GOL A 616
11
AD2
SOFTWARE
GLU A:116 , GLU A:118 , PRO A:159 , PHE A:160 , PHE A:161 , GLN A:423 , HIS A:426 , PHE A:431 , ILE A:436
binding site for residue GOL A 617
12
AE4
SOFTWARE
ASN A:95 , HOH A:707
binding site for Mono-Saccharide NAG A 604 bound to ASN A 95
13
AE5
SOFTWARE
ASN A:205 , SER A:208 , LEU A:210 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:706 , HOH A:732 , HOH A:735 , HOH A:801 , HOH A:991
binding site for Mono-Saccharide NAG A 606 bound to ASN A 205
14
AE6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , HOH A:714 , HOH A:758
binding site for Mono-Saccharide NAG A 603 bound to ASN A 241
15
AE7
SOFTWARE
ASN A:332 , SER A:334 , HOH A:880
binding site for Mono-Saccharide NAG A 605 bound to ASN A 332
16
AF3
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
17
AF4
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
18
AF5
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
19
AF6
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
20
AF7
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
21
AF8
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
22
AF9
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
23
AG1
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
24
AG2
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
25
AG3
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (225 KB)
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