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5FF1
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (111 KB)
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Title
:
TWO WAY MODE OF BINDING OF ANTITHYROID DRUG METHIMAZOLE TO MAMMALIAN HEME PEROXIDASES: STRUCTURE OF THE COMPLEX OF LACTOPEROXIDASE WITH METHIMAZOLE AT 1.97 ANGSTROM RESOLUTION
Authors
:
R. P. Singh, A. Singh, H. Sirohi, A. K. Singh, P. Kaur, S. Sharma, T. P. Sin
Date
:
17 Dec 15 (Deposition) - 13 Jan 16 (Release) - 27 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Inhibitor, Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Singh, A. Singh, H. V. Sirohi, A. K. Singh, P. Kaur, S. Sharma, T. P. Singh
Dual Binding Mode Of Antithyroid Drug Methimazole To Mammalian Heme Peroxidases - Structural Determination Of Th Lactoperoxidase-Methimazole Complex At 1. 97 Angstrom Resolution.
Febs Open Bio V. 6 640 2016
[
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Hetero Components
(6, 34)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZa)
4b: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZb)
4c: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZc)
4d: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6a: NITRATE ION (NO3a)
6b: NITRATE ION (NO3b)
6c: NITRATE ION (NO3c)
6d: NITRATE ION (NO3d)
6e: NITRATE ION (NO3e)
6f: NITRATE ION (NO3f)
6g: NITRATE ION (NO3g)
6h: NITRATE ION (NO3h)
6i: NITRATE ION (NO3i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MMZ
4
Ligand/Ion
1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
5
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NO3
9
Ligand/Ion
NITRATE ION
[
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Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , GLN A:423 , ILE A:436 , ARG A:440 , MMZ A:601 , MMZ A:602 , HOH A:703 , HOH A:817
binding site for residue HEM A 607
02
AC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
binding site for residue CA A 608
03
AC3
SOFTWARE
ALA A:44 , ARG A:45 , TRP A:46 , LEU A:47 , SER A:340 , ASN A:341 , VAL A:342 , MET A:446 , TRP A:452 , HOH A:802
binding site for residue NO3 A 609
04
AC4
SOFTWARE
ASN A:241 , THR A:242 , THR A:243 , HOH A:858
binding site for residue NO3 A 610
05
AC5
SOFTWARE
LEU A:92 , LYS A:402 , ASN A:403 , HOH A:779 , HOH A:820 , HOH A:979
binding site for residue NO3 A 611
06
AC6
SOFTWARE
ILE A:306 , PHE A:309 , ARG A:310 , TRP A:529 , TRP A:530 , GLU A:531
binding site for residue NO3 A 612
07
AC7
SOFTWARE
ASN A:408 , ASN A:410 , LYS A:411
binding site for residue NO3 A 613
08
AC8
SOFTWARE
GLU A:52 , PHE A:59 , GLY A:60 , TRP A:61 , THR A:62 , LYS A:65 , ARG A:71 , VAL A:72
binding site for residue GOL A 614
09
AC9
SOFTWARE
GLU A:52 , LYS A:65 , THR A:66 , HOH A:708
binding site for residue GOL A 615
10
AD1
SOFTWARE
ALA A:56 , TRP A:61 , ASP A:137 , ARG A:162 , HOH A:755
binding site for residue GOL A 616
11
AD2
SOFTWARE
GLU A:116 , GLU A:118 , PRO A:159 , PHE A:160 , PHE A:161 , GLN A:423 , HIS A:426 , PHE A:431 , ILE A:436
binding site for residue GOL A 617
12
AD3
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , ARG B:255 , GLU B:258 , GLN B:259 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , LEU B:433 , ILE B:436 , ARG B:440 , MMZ B:601 , MMZ B:613 , HOH B:726 , HOH B:735
binding site for residue HEM B 607
13
AD4
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
binding site for residue CA B 608
14
AD5
SOFTWARE
ALA B:44 , ARG B:45 , TRP B:46 , LEU B:47 , SER B:340 , ASN B:341 , VAL B:342 , MET B:446 , TRP B:452 , HOH B:706
binding site for residue NO3 B 609
15
AD6
SOFTWARE
ARG B:76 , PRO B:149 , LYS B:150 , ASN B:419 , HOH B:788 , HOH B:864
binding site for residue NO3 B 610
16
AD7
SOFTWARE
ASP B:311 , HIS B:565 , ALA B:566 , PHE B:567 , HOH B:867
binding site for residue NO3 B 611
17
AD8
SOFTWARE
LEU B:92 , LYS B:402 , ASN B:403 , HOH B:709 , HOH B:785
binding site for residue NO3 B 612
18
AD9
SOFTWARE
ALA B:56 , VAL B:57 , TRP B:61 , ASP B:137 , ARG B:162 , HOH B:897
binding site for residue GOL B 614
19
AE1
SOFTWARE
GLU B:52 , PHE B:59 , GLY B:60 , TRP B:61 , THR B:62 , LYS B:65 , THR B:66 , ARG B:71 , VAL B:72
binding site for residue GOL B 615
20
AE2
SOFTWARE
GLU B:52 , PHE B:59 , LYS B:65 , THR B:66
binding site for residue GOL B 616
21
AE3
SOFTWARE
ASN B:532 , PRO B:533 , GLY B:534 , HOH B:718 , HOH B:873
binding site for residue GOL B 617
22
AE4
SOFTWARE
ASN A:95 , HOH A:707
binding site for Mono-Saccharide NAG A 604 bound to ASN A 95
23
AE5
SOFTWARE
ASN A:205 , SER A:208 , LEU A:210 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:706 , HOH A:732 , HOH A:735 , HOH A:801 , HOH A:991
binding site for Mono-Saccharide NAG A 606 bound to ASN A 205
24
AE6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , HOH A:714 , HOH A:758
binding site for Mono-Saccharide NAG A 603 bound to ASN A 241
25
AE7
SOFTWARE
ASN A:332 , SER A:334 , HOH A:880
binding site for Mono-Saccharide NAG A 605 bound to ASN A 332
26
AE8
SOFTWARE
ASN B:95 , HOH B:702
binding site for Mono-Saccharide NAG B 602 bound to ASN B 95
27
AE9
SOFTWARE
ASN B:205 , SER B:208 , LEU B:210 , ALA B:214 , VAL B:215 , GLN B:217 , TRP B:220 , HOH B:756 , HOH B:896
binding site for Poly-Saccharide residues NAG B 605 through NAG B 606 bound to ASN B 205
28
AF1
SOFTWARE
ASN B:241 , ALA B:244 , TRP B:384 , HOH B:710 , HOH B:947
binding site for Mono-Saccharide NAG B 603 bound to ASN B 241
29
AF2
SOFTWARE
ASN B:332 , SER B:334 , HOH B:795
binding site for Mono-Saccharide NAG B 604 bound to ASN B 332
30
AF3
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
31
AF4
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
32
AF5
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
33
AF6
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
34
AF7
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
35
AF8
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
36
AF9
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
37
AG1
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
38
AG2
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
39
AG3
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , HEM A:607 , HOH A:701 , HOH A:1084
binding site for residues MMZ A 601 and MMZ A 602
40
AG4
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
41
AG5
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
42
AG6
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
43
AG7
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
44
AG8
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
45
AG9
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
46
AH1
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
47
AH2
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:607 , HOH B:701 , HOH B:1033 , HOH B:1042
binding site for residues MMZ B 601 and MMZ B 613
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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