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5FEX
Asym. Unit
Info
Asym.Unit (155 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
HYDE FROM T. MARITIMA IN COMPLEX WITH SE-ADENOSYL-L-SELENOCYSTEINE (TFINAL OF THE REACTION)
Authors
:
R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berte J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Date
:
17 Dec 15 (Deposition) - 06 Apr 16 (Release) - 04 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.32
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Radical Sam Enzyme, Complex, Fefe-Hydrogenase Maturase, Thazolidine, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berteau, J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Carbon-Sulfur Bond-Forming Reaction Catalysed By The Radica Sam Enzyme Hyde.
Nat. Chem. V. 8 491 2016
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: 5'-DEOXYADENOSINE (5ADa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
3b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
3c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
3d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
3e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
4a: METHIONINE (METa)
5a: 2-HYDROXY-L-TYROSINE (OTYa)
6a: SELENOCYSTEINE (SECa)
7a: IRON/SULFUR CLUSTER (SF4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5AD
1
Ligand/Ion
5'-DEOXYADENOSINE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
CPS
5
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
4
MET
1
Mod. Amino Acid
METHIONINE
5
OTY
1
Mod. Amino Acid
2-HYDROXY-L-TYROSINE
6
SEC
1
Ligand/Ion
SELENOCYSTEINE
7
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:63 , CYS A:67 , CYS A:70 , MET A:411
binding site for residue SF4 A 401
02
AC2
SOFTWARE
GLN A:98 , PHE A:99 , GLY A:100 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , CPS A:406 , HOH A:535 , HOH A:605 , HOH A:612 , HOH A:673 , HOH A:686 , HOH A:764 , HOH A:941
binding site for residue CPS A 402
03
AC3
SOFTWARE
LYS A:37 , ASP A:40 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , HOH A:595 , HOH A:599 , HOH A:628 , HOH A:684 , HOH A:746 , HOH A:892
binding site for residue CPS A 403
04
AC4
SOFTWARE
ARG A:29 , GLU A:33 , THR A:247 , LEU A:250 , CPS A:405 , HOH A:516 , HOH A:632 , HOH A:701 , HOH A:957
binding site for residue CPS A 404
05
AC5
SOFTWARE
ARG A:29 , GLU A:314 , LYS A:315 , THR A:317 , ALA A:318 , CPS A:404 , CPS A:406 , HOH A:586 , HOH A:621 , HOH A:656 , HOH A:661 , HOH A:689
binding site for residue CPS A 405
06
AC6
SOFTWARE
LYS A:128 , PRO A:321 , MET A:324 , LYS A:325 , GLU A:328 , CPS A:402 , CPS A:405 , HOH A:662 , HOH A:781 , HOH A:784 , HOH A:797 , HOH A:894 , HOH A:937 , HOH A:954
binding site for residue CPS A 406
07
AC7
SOFTWARE
ARG A:54 , THR A:134 , ARG A:155
binding site for residue CL A 407
08
AC8
SOFTWARE
ARG A:159 , SEC A:412 , HOH A:818
binding site for residue CL A 408
09
AC9
SOFTWARE
TYR A:306 , SEC A:412
binding site for residue CL A 409
10
AD1
SOFTWARE
TYR A:69 , ARG A:159 , GLU A:161 , MET A:199 , PRO A:229 , ILE A:231 , LEU A:305 , TYR A:306 , MET A:411 , SEC A:412 , HOH A:649 , HOH A:698
binding site for residue 5AD A 410
11
AD2
SOFTWARE
SER A:108 , SER A:136 , GLY A:138 , ARG A:180 , TYR A:303 , LEU A:305 , SF4 A:401 , 5AD A:410 , HOH A:569 , HOH A:601 , HOH A:649
binding site for residue MET A 411
12
AD3
SOFTWARE
GLN A:107 , ARG A:159 , THR A:268 , THR A:269 , ALA A:270 , TYR A:306 , CL A:408 , CL A:409 , 5AD A:410 , HOH A:529 , HOH A:609 , HOH A:697 , HOH A:793
binding site for residue SEC A 412
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SAPs(SNPs)/Variants
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Exons
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (155 KB)
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