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5FCW
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
HDAC8 COMPLEXED WITH A HYDROXAMIC ACID
Authors
:
K. E. Cole, K. Perry
Date
:
15 Dec 15 (Deposition) - 26 Oct 16 (Release) - 26 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Histone Deacetylase, Hdac8, Hydroxamic Acid, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Tabackman, R. Frankson, E. S. Marsan, K. Perry, K. E. Cole
Structure Of 'Linkerless' Hydroxamic Acid Inhibitor-Hdac8 Complex Confirms The Formation Of An Isoform-Specific Subpocket.
J. Struct. Biol. V. 195 373 2016
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: 4-NAPHTHALEN-1-YL-~{N}-OXIDANYL-BE... (5YAa)
1b: 4-NAPHTHALEN-1-YL-~{N}-OXIDANYL-BE... (5YAb)
1c: 4-NAPHTHALEN-1-YL-~{N}-OXIDANYL-BE... (5YAc)
1d: 4-NAPHTHALEN-1-YL-~{N}-OXIDANYL-BE... (5YAd)
2a: GLYCEROL (GOLa)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: HEXAETHYLENE GLYCOL (P6Ga)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
5YA
4
Ligand/Ion
4-NAPHTHALEN-1-YL-~{N}-OXIDANYL-BENZAMIDE
2
GOL
1
Ligand/Ion
GLYCEROL
3
K
2
Ligand/Ion
POTASSIUM ION
4
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
5
ZN
2
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:101 , HIS A:142 , HIS A:143 , ASP A:178 , HIS A:180 , PHE A:208 , ASP A:267 , TYR A:306 , ZN A:402 , HOH A:655 , PRO B:273 , 5YA B:405
binding site for residue 5YA A 401
02
AC2
SOFTWARE
ASP A:178 , HIS A:180 , ASP A:267 , 5YA A:401
binding site for residue ZN A 402
03
AC3
SOFTWARE
ASP A:176 , ASP A:178 , HIS A:180 , SER A:199 , LEU A:200
binding site for residue K A 403
04
AC4
SOFTWARE
GLU A:170
binding site for residue P6G A 404
05
AC5
SOFTWARE
PRO A:273 , TYR B:100 , HIS B:143 , GLY B:151 , PHE B:152 , HIS B:180 , PHE B:208 , ASP B:267 , GLY B:304 , TYR B:306 , ZN B:402 , 5YA B:404 , HOH B:501
binding site for residue 5YA B 401
06
AC6
SOFTWARE
ASP B:178 , HIS B:180 , ASP B:267 , 5YA B:401 , HOH B:501
binding site for residue ZN B 402
07
AC7
SOFTWARE
ASP B:176 , ASP B:178 , HIS B:180 , SER B:199 , LEU B:200
binding site for residue K B 403
08
AC8
SOFTWARE
LYS A:33 , PRO A:273 , LYS B:33 , TYR B:100 , PRO B:273 , MET B:274 , 5YA B:401 , 5YA B:405
binding site for residue 5YA B 404
09
AC9
SOFTWARE
TYR A:100 , PHE A:152 , 5YA A:401 , ALA B:32 , LYS B:33 , PHE B:152 , TYR B:306 , 5YA B:404
binding site for residue 5YA B 405
10
AD1
SOFTWARE
ALA B:188 , HOH B:517 , HOH B:535
binding site for residue GOL B 406
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (131 KB)
Header - Asym.Unit
Biol.Unit 1 (66 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
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