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5FBB
Biol. Unit 1
Info
Asym.Unit (107 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
S1 NUCLEASE FROM ASPERGILLUS ORYZAE IN COMPLEX WITH PHOSPHATE AND ADENOSINE 5'-MONOPHOSPHATE
Authors
:
T. Koval, L. H. Oestergaard, J. Dohnalek
Date
:
14 Dec 15 (Deposition) - 28 Dec 16 (Release) - 11 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Endonuclease, Zinc Dependent, Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Koval, L. H. Stergaard, J. Lehmbeck, A. Nrgaard, P. Lipovova, J. Duskova, T. Skalova, M. Trundova, P. Kolenko, K. Fejfarova, J. Stransky, L. Svecova, J. Hasek, J. Dohnalek
Structural And Catalytic Properties Of S1 Nuclease From Aspergillus Oryzae Responsible For Substrate Recognition, Cleavage, Non-Specificity, And Inhibition.
Plos One V. 11 68832 2016
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
2b: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBb)
2c: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBc)
2d: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBd)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
4a: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
8c: ZINC ION (ZNc)
8d: ZINC ION (ZNd)
8e: ZINC ION (ZNe)
8f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
BTB
2
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
CA
-1
Ligand/Ion
CALCIUM ION
4
ETE
1
Ligand/Ion
2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5
NA
-1
Ligand/Ion
SODIUM ION
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
PO4
1
Ligand/Ion
PHOSPHATE ION
8
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD9 (SOFTWARE)
15: AE4 (SOFTWARE)
16: AE5 (SOFTWARE)
17: AE6 (SOFTWARE)
18: AE7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:21 , HIS A:26 , ASP A:139 , ZN A:402 , PO4 A:601
binding site for residue ZN A 401
02
AC2
SOFTWARE
ASP A:65 , HIS A:80 , HIS A:135 , ASP A:139 , ZN A:401 , PO4 A:601
binding site for residue ZN A 402
03
AC3
SOFTWARE
HIS A:145 , HIS A:168 , ASP A:172 , PO4 A:601 , HOH A:1203
binding site for residue ZN A 403
04
AC4
SOFTWARE
TRP A:21 , HIS A:26 , ASP A:65 , LYS A:68 , HIS A:135 , ASP A:139 , HIS A:145 , ASP A:172 , ZN A:401 , ZN A:402 , ZN A:403 , HOH A:1203 , HOH A:1584 , HOH A:1599
binding site for residue PO4 A 601
05
AC5
SOFTWARE
GLU A:42 , PHE A:81 , ASP A:83 , LEU A:144 , GLU A:147 , ALA A:151 , GLY A:152 , ASN A:154 , HIS A:168 , NA A:801 , HOH A:1504 , HOH A:1542 , HOH A:1547 , HOH A:1557 , HOH A:1617 , HOH A:1624 , HOH A:1656 , BTB B:1001
binding site for residue AMP A 701
06
AC6
SOFTWARE
ASP A:83 , AMP A:701 , HOH A:1542 , HOH A:1547 , HOH A:1555 , HOH A:1701 , HOH A:1721
binding site for residue NA A 801
07
AC7
SOFTWARE
LEU A:118 , SER A:249 , ETE A:1101 , HOH A:1559 , HOH A:1596
binding site for residue NA A 802
08
AC8
SOFTWARE
ASP A:209 , ASP A:213 , BTB A:1001 , HOH A:1570
binding site for residue CA A 901
09
AC9
SOFTWARE
BTB A:1002 , HOH A:1507 , SER B:222
binding site for residue CA A 902
10
AD1
SOFTWARE
SER A:206 , HOH A:1642 , HOH B:1523 , HOH B:1535 , HOH B:1545 , HOH B:1590 , HOH B:1708 , HOH B:1712
binding site for residue CA A 903
11
AD2
SOFTWARE
ASP A:209 , THR A:212 , ASP A:213 , CA A:901 , HOH A:1554 , HOH A:1570 , HOH A:1655 , ASP B:52 , THR B:54 , AMP B:701 , HOH B:1607
binding site for residue BTB A 1001
12
AD3
SOFTWARE
ASN A:23 , THR A:173 , GLU A:177 , TYR A:183 , CA A:902 , HOH A:1503 , HOH A:1507 , HOH A:1523 , HOH A:1560 , HOH A:1572 , ASP B:219 , VAL B:221 , SER B:222
binding site for residue BTB A 1002
13
AD4
SOFTWARE
LEU A:118 , PRO A:121 , THR A:159 , SER A:249 , THR A:250 , ASP A:251 , SER A:253 , ALA A:283 , NA A:802 , HOH A:1643
binding site for residue ETE A 1101
14
AD9
SOFTWARE
BTB A:1001 , GLU B:42 , PHE B:81 , ASP B:83 , LEU B:144 , GLU B:147 , ALA B:151 , GLY B:152 , ASN B:154 , HIS B:168 , NA B:801 , HOH B:1515 , HOH B:1532 , HOH B:1534 , HOH B:1574 , HOH B:1577 , HOH B:1596
binding site for residue AMP B 701
15
AE4
SOFTWARE
ASP A:52 , THR A:54 , AMP A:701 , ASP B:209 , THR B:212 , ASP B:213 , CA B:901 , HOH B:1550 , HOH B:1662
binding site for residue BTB B 1001
16
AE5
SOFTWARE
ASP A:219 , VAL A:221 , SER A:222 , ASN B:23 , THR B:173 , GLU B:177 , TYR B:183 , CA B:902 , HOH B:1505 , HOH B:1536 , HOH B:1543 , HOH B:1585 , HOH B:1595 , HOH B:1615 , HOH B:1621
binding site for residue BTB B 1002
17
AE6
SOFTWARE
TYR A:79 , ASN A:112 , TYR A:113 , GLU A:125 , HOH A:1501 , HOH A:1516 , HOH A:1526 , HOH A:1593
binding site for Mono-Saccharide NAG A 501 bound to ASN A 112
18
AE7
SOFTWARE
GLU A:150 , GLY A:155 , ILE A:156 , ASP A:157 , ASP A:193 , LEU A:244 , ALA A:245 , ASN A:248 , HOH A:1550 , HOH A:1556 , HOH A:1567 , HOH A:1638 , HOH A:1644 , GLY B:162
binding site for Mono-Saccharide NAG A 502 bound to ASN A 248
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (107 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
Header - Biol.Unit 2
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