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5F96
Asym. Unit
Info
Asym.Unit (274 KB)
Biol.Unit 1 (264 KB)
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Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VH1-46 GERMLINE-DERIVED CD4-BINDING SITE-DIRECTED ANTIBODY CH235.12 IN COMPLEX WITH HIV-1 CLADE A/E 93TH057 GP120
Authors
:
T. Zhou, P. D. Kwong
Date
:
09 Dec 15 (Deposition) - 09 Mar 16 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : G,H,L
Biol. Unit 1: G,H,L (1x)
Keywords
:
Hiv-1, Antibody, Ch235 Lineage, Vh1-46 Germline, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Bonsignori, T. Zhou, Z. Sheng, L. Chen, F. Gao, M. G. Joyce, G. Ozorowski, G. Y. Chuang, C. A. Schramm, K. Wiehe, S. M. Alam, T. Bradley, M. A. Gladden, K. K. Hwang, S. Iyengar, A. Kumar, X. Lu, K. Luo, M. C. Mangiapani, R. J. Parks, H. Song, P. Acharya, R. T. Bailer, A. Cao, A. Druz, I. S. Georgiev, Y. D. Kwon, M. K. Louder, B. Zhang, A. Zheng, B. J. Hill, R. Kong, C. Soto, J. C. Mullikin, D. C. Douek, D. C. Montefiori, M. A. Moody, G. M. Shaw, B. H. Hahn, G. Kelsoe, P. T. Hraber, B. T. Korber, S. D. Boyd, A. Z. Fire, T. B. Kepler, L. Shapiro, A. B. Ward, J. R. Mascola, H. X. Liao, P. D. Kwong, B. F. Hayne
Maturation Pathway From Germline To Broad Hiv-1 Neutralizer Of A Cd4-Mimic Antibody.
Cell V. 165 449 2016
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
1c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG G:327 , LYS G:421 , GLN G:422 , ILE G:423
binding site for residue EPE G 513
02
AC2
SOFTWARE
ALA G:60 , GLU G:62 , THR G:63 , THR G:71 , HIS G:72
binding site for residue EPE G 514
03
AC3
SOFTWARE
ILE L:106 , LYS L:107 , ARG L:108 , SER L:168 , LYS L:169 , SER L:171
binding site for residue EPE L 301
04
AC4
SOFTWARE
ASN G:88 , LYS H:117
binding site for Mono-Saccharide NAG G 501 bound to ASN G 88
05
AC5
SOFTWARE
ASN G:234 , THR G:236 , PRO G:238 , SER G:274 , ASN G:276 , HIS G:352 , NAG G:505
binding site for Mono-Saccharide NAG G 502 bound to ASN G 234
06
AC6
SOFTWARE
GLU G:83 , ASN G:229 , ASN G:241
binding site for Mono-Saccharide NAG G 503 bound to ASN G 241
07
AC7
SOFTWARE
LEU G:261 , ASN G:262 , ARG G:379 , CYS G:445 , VAL G:446 , SER G:447 , HOH G:605 , HOH G:610
binding site for Mono-Saccharide NAG G 504 bound to ASN G 262
08
AC8
SOFTWARE
ASN G:276 , HIS G:352 , NAG G:502 , HOH G:638 , ARG L:30
binding site for Mono-Saccharide NAG G 505 bound to ASN G 276
09
AC9
SOFTWARE
GLU G:268 , GLU G:269 , ILE G:270 , ASN G:289 , GLN G:344 , LYS G:348 , HOH G:619 , SER H:25
binding site for Mono-Saccharide NAG G 506 bound to ASN G 289
10
AD1
SOFTWARE
GLU G:293 , ASN G:295 , GLU G:332
binding site for Mono-Saccharide NAG G 507 bound to ASN G 295
11
AD2
SOFTWARE
ASN G:334 , LYS G:337
binding site for Mono-Saccharide NAG G 508 bound to ASN G 334
12
AD3
SOFTWARE
ASN G:355 , SER H:105
binding site for Mono-Saccharide NAG G 509 bound to ASN G 355
13
AD4
SOFTWARE
ASN G:386 , THR G:388
binding site for Mono-Saccharide NAG G 510 bound to ASN G 386
14
AD5
SOFTWARE
ASN G:392 , THR G:394 , CYS G:395 , CYS G:410
binding site for Mono-Saccharide NAG G 511 bound to ASN G 392
15
AD6
SOFTWARE
SER G:291 , ASN G:448
binding site for Mono-Saccharide NAG G 512 bound to ASN G 448
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (264 KB)
Header - Biol.Unit 1
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