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5F4R
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
HIV-1 GP120 COMPLEX WITH BNW-IV-147
Authors
:
S. Liang, W. A. Hendrickson
Date
:
03 Dec 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Gp120, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Melillo, S. Liang, J. Park, A. Schon, J. R. Courter, J. M. Lalonde, D. J. Wendler, A. M. Princiotto, M. S. Seaman, E. Freire, J. Sodroski, N. Madani, W. A. Hendrickson, A. B. Smith
Small-Molecule Cd4-Mimics: Structure-Based Optimization Of Hiv-1 Entry Inhibition.
Acs Med Chem Lett V. 7 330 2016
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: ~{N}'-[(1~{R},2~{R})-2-(CARBAMIMID... (5VFa)
1b: ~{N}'-[(1~{R},2~{R})-2-(CARBAMIMID... (5VFb)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5VF
2
Ligand/Ion
~{N}'-[(1~{R},2~{R})-2-(CARBAMIMIDAMIDOMETHYL)-5-[[CARBAMIMIDOYL(METHYL)AMINO]METHYL]-2,3-DIHYDRO-1~{H}-INDEN-1-YL]-~{N}-(4-CHLORANYL-3-FLUORANYL-PHENYL)ETHANEDIAMIDE
2
FMT
2
Ligand/Ion
FORMIC ACID
3
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:425 , ARG A:432 , 5VF A:508
binding site for residue FMT A 501
02
AC2
SOFTWARE
ASN A:234 , THR A:236 , PRO A:238 , LEU A:277
binding site for residue NAG A 502
03
AC3
SOFTWARE
ASP A:211 , LYS A:252 , ASN A:262 , CYS A:445 , ASN A:446 , SER A:447
binding site for residue NAG A 503
04
AC4
SOFTWARE
ASN A:276 , THR A:278 , HOH A:603 , LYS C:97 , GLU C:275 , LYS C:282 , NAG C:504
binding site for residue NAG A 504
05
AC5
SOFTWARE
GLU A:268 , GLU A:269 , ILE A:270 , ASN A:289
binding site for residue NAG A 505
06
AC6
SOFTWARE
ASN A:386 , SER A:388
binding site for residue NAG A 506
07
AC7
SOFTWARE
ASN A:392 , THR A:406 , ARG A:408
binding site for residue NAG A 507
08
AC8
SOFTWARE
SER A:256 , THR A:257 , GLU A:370 , ILE A:371 , SER A:375 , PHE A:376 , ASN A:377 , PHE A:382 , ASN A:425 , MET A:426 , TRP A:427 , GLU A:429 , VAL A:430 , GLY A:431 , GLY A:473 , MET A:475 , FMT A:501
binding site for residue 5VF A 508
09
AC9
SOFTWARE
ASN C:425 , GLY C:431 , ARG C:432 , 5VF C:508
binding site for residue FMT C 501
10
AD1
SOFTWARE
ASN C:234 , THR C:236 , LEU C:277 , HIS C:352
binding site for residue NAG C 502
11
AD2
SOFTWARE
ASP C:211 , LYS C:252 , ASN C:262 , CYS C:445 , ASN C:446 , SER C:447
binding site for residue NAG C 503
12
AD3
SOFTWARE
THR A:278 , NAG A:504 , ASN C:276 , THR C:278
binding site for residue NAG C 504
13
AD4
SOFTWARE
GLU C:268 , GLU C:269 , ILE C:270 , ASN C:289 , GLU C:348
binding site for residue NAG C 505
14
AD5
SOFTWARE
THR C:372 , ASN C:386 , SER C:388
binding site for residue NAG C 506
15
AD6
SOFTWARE
PRO C:363 , ASN C:392 , ARG C:396 , ASN C:404
binding site for residue NAG C 507
16
AD7
SOFTWARE
SER C:256 , GLU C:370 , ILE C:371 , SER C:375 , PHE C:376 , ASN C:377 , PHE C:382 , ASN C:425 , MET C:426 , TRP C:427 , GLU C:429 , VAL C:430 , GLY C:431 , GLY C:473 , MET C:475 , FMT C:501
binding site for residue 5VF C 508
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (121 KB)
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