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5F4O
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (295 KB)
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(1)
Title
:
PROTRUDING DOMAIN OF GII.17 NOROVIRUS KAWASAKI308
Authors
:
B. K. Singh, G. S. Hansman
Date
:
03 Dec 15 (Deposition) - 13 Jan 16 (Release) - 24 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Norovirus, Capsid Protein, Protruding Domain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. K. Singh, A. Koromyslova, L. Hefele, C. Gurth, G. S. Hansman
Structural Evolution Of The Emerging 2014-2015 Gii. 17 Noroviruses.
J. Virol. V. 90 2710 2015
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:456 , HIS A:460 , HOH A:729 , HOH A:834 , HOH A:871
binding site for residue EDO A 601
02
AC2
SOFTWARE
GLN A:402 , TRP A:403 , HOH A:702 , HOH A:790 , HOH A:952
binding site for residue EDO A 602
03
AC3
SOFTWARE
GLN A:277 , ASN A:306 , LEU A:307 , ASN A:308 , HOH A:755 , HOH A:769 , HOH A:789
binding site for residue EDO A 603
04
AC4
SOFTWARE
LEU A:272 , GLN A:273 , GLY A:274 , THR A:276 , LEU A:322 , HOH A:734
binding site for residue EDO A 604
05
AC5
SOFTWARE
PHE A:379 , GLN A:380 , HOH A:709 , HOH A:892
binding site for residue EDO A 605
06
AC6
SOFTWARE
LEU A:229 , ARG A:516 , PHE A:517
binding site for residue MG A 606
07
AC7
SOFTWARE
HOH A:729 , PRO B:230 , GLU B:456 , HIS B:460 , HOH B:850 , HOH B:852
binding site for residue EDO B 601
08
AC8
SOFTWARE
PHE B:379 , GLN B:380 , HOH B:719 , HOH B:807
binding site for residue EDO B 602
09
AC9
SOFTWARE
LEU B:272 , GLN B:273 , GLY B:274 , THR B:276 , LEU B:322
binding site for residue EDO B 603
10
AD1
SOFTWARE
GLN B:277 , ASN B:306 , LEU B:307 , ASN B:308 , HOH B:720 , HOH B:730 , HOH B:803
binding site for residue EDO B 604
11
AD2
SOFTWARE
LEU B:229 , ARG B:516 , PHE B:517 , HOH B:757
binding site for residue MG B 605
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SAPs(SNPs)/Variants
(0, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (302 KB)
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