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5F3G
Biol. Unit 4
Info
Asym.Unit (472 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (120 KB)
Biol.Unit 4 (118 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN KDM4A IN COMPLEX WITH COMPOUND 53A
Authors
:
Y. -V. Le Bihan, I. M. Westwood, R. L. M. Van Montfort
Date
:
02 Dec 15 (Deposition) - 20 Jan 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Epigenetics, Demethylase, Inhibitor, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Bavetsias, R. M. Lanigan, G. F. Ruda, B. Atrash, M. G. Mclaughlin, A. Tumber, N. Y. Mok, Y. V. Le Bihan, S. Dempster, K. J. Boxall, F. Jeganathan, S. B. Hatch, P. Savitsky, S. Velupillai, T. Krojer, K. S. England, J. Sejberg, C. Thai, A. Donovan, A. Pal, G. Scozzafava, J. M. Bennett, A. Kawamura, C. Johansson, A. Szykowska, C. Gileadi, N. A. Burgess-Brown, F. Von Delft, U. Oppermann, Z. Walters, J. Shipley, F. I. Raynaud, S. M. Westaway, R. K. Prinjha, O. Fedorov, R. Burke, C. J. Schofield, I. M. Westwood, C. Bountra, S. Muller, R. L. Van Montfort, P. E. Brennan, J. Blagg
8-Substituted Pyrido[3, 4-D]Pyrimidin-4(3H)-One Derivatives As Potent, Cell Permeable, Kdm4 (Jmjd2) And Kdm5 (Jarid1) Histone Lysine Demethylase Inhibitors.
J. Med. Chem. V. 59 1388 2016
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 8-[4-[2-[4-[(4-CHLOROPHENYL)METHYL... (5ULa)
1b: 8-[4-[2-[4-[(4-CHLOROPHENYL)METHYL... (5ULb)
1c: 8-[4-[2-[4-[(4-CHLOROPHENYL)METHYL... (5ULc)
1d: 8-[4-[2-[4-[(4-CHLOROPHENYL)METHYL... (5ULd)
2a: CHLORIDE ION (CLa)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
3f: DIMETHYL SULFOXIDE (DMSf)
3g: DIMETHYL SULFOXIDE (DMSg)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
5UL
1
Ligand/Ion
8-[4-[2-[4-[(4-CHLOROPHENYL)METHYL]PIPERIDIN-1-YL]ETHYL]PYRAZOL-1-YL]-3~{H}-PYRIDO[3,4-D]PYRIMIDIN-4-ONE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
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1: AD5 (SOFTWARE)
2: AD6 (SOFTWARE)
3: AD7 (SOFTWARE)
4: AD8 (SOFTWARE)
5: AD9 (SOFTWARE)
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Description
1
AD5
SOFTWARE
HIS D:188 , GLU D:190 , HIS D:276 , 5UL D:403
binding site for residue ZN D 401
2
AD6
SOFTWARE
CYS D:234 , HIS D:240 , CYS D:306 , CYS D:308
binding site for residue ZN D 402
3
AD7
SOFTWARE
TYR D:132 , TYR D:177 , PHE D:185 , HIS D:188 , GLU D:190 , LYS D:206 , TRP D:208 , LYS D:241 , HIS D:276 , ZN D:401
binding site for residue 5UL D 403
4
AD8
SOFTWARE
HIS D:240
binding site for residue DMS D 404
5
AD9
SOFTWARE
THR D:83 , PHE D:227 , SER D:230 , THR D:243
binding site for residue DMS D 405
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SAPs(SNPs)/Variants
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SCOP Domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (472 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (120 KB)
Header - Biol.Unit 3
Biol.Unit 4 (118 KB)
Header - Biol.Unit 4
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