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5F3E
Biol. Unit 2
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Asym.Unit (490 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (125 KB)
Biol.Unit 3 (123 KB)
Biol.Unit 4 (123 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN KDM4A IN COMPLEX WITH COMPOUND 54A
Authors
:
Y. -V. Le Bihan, I. M. Westwood, R. L. M. Van Montfort
Date
:
02 Dec 15 (Deposition) - 20 Jan 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Epigenetics, Demethylase, Inhibitor, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Bavetsias, R. M. Lanigan, G. F. Ruda, B. Atrash, M. G. Mclaughlin, A. Tumber, N. Y. Mok, Y. V. Le Bihan, S. Dempster, K. J. Boxall, F. Jeganathan, S. B. Hatch, P. Savitsky, S. Velupillai, T. Krojer, K. S. England, J. Sejberg, C. Thai, A. Donovan, A. Pal, G. Scozzafava, J. M. Bennett, A. Kawamura, C. Johansson, A. Szykowska, C. Gileadi, N. A. Burgess-Brown, F. Von Delft, U. Oppermann, Z. Walters, J. Shipley, F. I. Raynaud, S. M. Westaway, R. K. Prinjha, O. Fedorov, R. Burke, C. J. Schofield, I. M. Westwood, C. Bountra, S. Muller, R. L. Van Montfort, P. E. Brennan, J. Blagg
8-Substituted Pyrido[3, 4-D]Pyrimidin-4(3H)-One Derivatives As Potent, Cell Permeable, Kdm4 (Jmjd2) And Kdm5 (Jarid1) Histone Lysine Demethylase Inhibitors.
J. Med. Chem. V. 59 1388 2016
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 8-[4-[2-[4-(4-CHLOROPHENYL)PIPERID... (5UOa)
1b: 8-[4-[2-[4-(4-CHLOROPHENYL)PIPERID... (5UOb)
1c: 8-[4-[2-[4-(4-CHLOROPHENYL)PIPERID... (5UOc)
1d: 8-[4-[2-[4-(4-CHLOROPHENYL)PIPERID... (5UOd)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
5UO
1
Ligand/Ion
8-[4-[2-[4-(4-CHLOROPHENYL)PIPERIDIN-1-YL]ETHYL]PYRAZOL-1-YL]-3~{H}-PYRIDO[3,4-D]PYRIMIDIN-4-ONE
2
DMS
-1
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
1
Ligand/Ion
GLYCEROL
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
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1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
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No.
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Description
1
AC5
SOFTWARE
HIS B:188 , GLU B:190 , HIS B:276 , 5UO B:403
binding site for residue ZN B 401
2
AC6
SOFTWARE
CYS B:234 , HIS B:240 , CYS B:306 , CYS B:308
binding site for residue ZN B 402
3
AC7
SOFTWARE
TYR B:132 , ASP B:135 , TYR B:175 , TYR B:177 , PHE B:185 , HIS B:188 , GLU B:190 , LYS B:206 , TRP B:208 , HIS B:276 , ZN B:401
binding site for residue 5UO B 403
4
AC8
SOFTWARE
VAL B:75 , THR B:76 , GLY B:77 , THR B:126 , PHE B:127 , VAL D:75 , THR D:76 , GLY D:77 , THR D:126 , PHE D:127 , HOH D:522
binding site for residue GOL B 404
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Chain B
Asymmetric Unit 1
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Asym.Unit (490 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
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Biol.Unit 3 (123 KB)
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