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5F30
Biol. Unit 2
Info
Asym.Unit (335 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (167 KB)
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Title
:
THIOCYANATE DEHYDROGENASE FROM THIOALKALIVIBRIO PARADOXUS
Authors
:
A. A. Trofimov, K. M. Polyakov, T. V. Tikhonova, S. I. Tsallagov, I. G. Sh A. N. Popov, V. O. Popov
Date
:
02 Dec 15 (Deposition) - 14 Dec 16 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Oxidoreductase, Thiocyanate Dehydrogenase, Copper Centers
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Reference
:
A. A. Trofimov, K. M. Polyakov, T. V. Tikhonova, S. I. Tsallagov, I. G. Shabalin, A. N. Popov, V. O. Popov
Thiocyanate Dehydrogenase From Thioalkalivibrio Paradoxus
To Be Published
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AD8 (SOFTWARE)
7: AD9 (SOFTWARE)
8: AE1 (SOFTWARE)
9: AE2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
HIS B:206 , ASP B:314 , HIS B:381 , ACT B:603 , ACT B:604 , HOH B:705
binding site for residue CU B 601
2
AC4
SOFTWARE
LYS B:103 , HIS B:135 , HIS B:528 , ACT B:604 , HOH B:702 , HOH B:918
binding site for residue CU B 602
3
AC5
SOFTWARE
HIS C:206 , ASP C:314 , HIS C:381 , ACT C:603 , ACT C:604 , HOH C:744
binding site for residue CU C 601
4
AC6
SOFTWARE
LYS C:103 , HIS C:135 , HIS C:136 , HIS C:528 , ACT C:604 , HOH C:702 , HOH C:801
binding site for residue CU C 602
5
AC7
SOFTWARE
MET C:451 , TRP C:453 , PRO C:458 , ASN C:459 , GLY C:460 , GLU C:474 , VAL C:475 , ASP C:476 , HOH C:714 , GLY D:272 , HOH D:735
binding site for residue GOL C 605
6
AD8
SOFTWARE
HIS B:135 , HIS B:136 , HIS B:206 , ASP B:314 , HIS B:381 , HIS B:437 , CU B:601 , CU B:602 , HOH B:702 , HOH B:723 , HOH B:918
binding site for residues ACT B 603 and ACT B 604
7
AD9
SOFTWARE
HIS B:135 , HIS B:136 , HIS B:206 , ASP B:314 , HIS B:381 , HIS B:437 , CU B:601 , CU B:602 , HOH B:702 , HOH B:723 , HOH B:918
binding site for residues ACT B 603 and ACT B 604
8
AE1
SOFTWARE
HIS C:135 , HIS C:136 , HIS C:206 , GLU C:288 , HIS C:381 , HIS C:437 , CU C:601 , CU C:602 , HOH C:702 , HOH C:744 , HOH C:801 , HOH C:806
binding site for residues ACT C 603 and ACT C 604
9
AE2
SOFTWARE
HIS C:135 , HIS C:136 , HIS C:206 , GLU C:288 , HIS C:381 , HIS C:437 , CU C:601 , CU C:602 , HOH C:702 , HOH C:744 , HOH C:801 , HOH C:806
binding site for residues ACT C 603 and ACT C 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (335 KB)
Header - Asym.Unit
Biol.Unit 1 (166 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
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