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Biol. Unit 1
Info
Asym.Unit (706 KB)
Biol.Unit 1 (144 KB)
Biol.Unit 2 (143 KB)
Biol.Unit 3 (146 KB)
Biol.Unit 4 (144 KB)
Biol.Unit 5 (141 KB)
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(1)
Title
:
STRUCTURE OF VPS35 N TERMINAL REGION
Authors
:
M. Lucas, D. Gershlick, A. Vidaurrazaga, A. L. Rojas, J. S. Bonifacino,
Date
:
27 Nov 15 (Deposition) - 07 Dec 16 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.07
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Protein Transport, Retromer, Sorting Nexin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lucas, D. C. Gershlick, A. Vidaurrazaga, A. L. Rojas, J. S. Bonifacino, A. Hierro
Structural Mechanism For Cargo Recognition By The Retromer Complex.
Cell V. 167 1623 2016
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AE2 (SOFTWARE)
09: AE3 (SOFTWARE)
10: AE4 (SOFTWARE)
11: AE9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:43 , LEU A:97 , VAL A:98
binding site for residue EDO A 501
02
AC3
SOFTWARE
GLN A:141 , HIS A:142 , ARG A:145
binding site for residue EDO A 503
03
AC4
SOFTWARE
ARG A:54 , ASN A:103 , ILE A:104
binding site for residue EDO A 504
04
AC5
SOFTWARE
GLN A:291 , ASN A:292 , ASP A:341
binding site for residue EDO A 505
05
AC6
SOFTWARE
LYS A:31 , TYR A:76 , PHE B:28
binding site for residue GOL A 506
06
AC7
SOFTWARE
ASN A:37 , LEU A:39 , MET A:40 , LYS A:90 , LYS E:90 , SO4 E:505
binding site for residue SO4 A 507
07
AC8
SOFTWARE
GLU A:231 , ARG B:54 , ASN B:103 , ILE B:104
binding site for residue EDO B 501
08
AE2
SOFTWARE
ARG A:284 , GLN D:330 , LYS D:371
binding site for residue EDO D 503
09
AE3
SOFTWARE
VAL A:25 , PHE A:28 , LYS D:31 , TYR D:76
binding site for residue GOL D 504
10
AE4
SOFTWARE
GLY A:51 , ARG D:158 , ASN D:159 , ARG D:226 , GLN D:229
binding site for residue GOL D 505
11
AE9
SOFTWARE
LYS A:90 , SO4 A:507 , LYS E:38 , LEU E:39 , MET E:40
binding site for residue SO4 E 505
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (706 KB)
Header - Asym.Unit
Biol.Unit 1 (144 KB)
Header - Biol.Unit 1
Biol.Unit 2 (143 KB)
Header - Biol.Unit 2
Biol.Unit 3 (146 KB)
Header - Biol.Unit 3
Biol.Unit 4 (144 KB)
Header - Biol.Unit 4
Biol.Unit 5 (141 KB)
Header - Biol.Unit 5
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