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5EWJ
Asym. Unit
Info
Asym.Unit (491 KB)
Biol.Unit 1 (245 KB)
Biol.Unit 2 (242 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN COMPLEX WITH IFENPRODIL
Authors
:
J. Pandit
Date
:
20 Nov 15 (Deposition) - 02 Mar 16 (Release) - 13 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.77
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Glutamate Receptor, Allosteric Modulator, Glun2B Antagonists, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Stroebel, D. L. Buhl, J. D. Knafels, P. K. Chanda, M. Green, S. Sciabola, L. Mony, P. Paoletti, J. Pandit
A Novel Binding Mode Reveals Two Distinct Classes Of Nmda Receptor Glun2B-Selective Antagonists.
Mol. Pharmacol. V. 89 541 2016
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
5a: 4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-... (QELa)
5b: 4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-... (QELb)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NA
2
Ligand/Ion
SODIUM ION
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
QEL
2
Ligand/Ion
4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-YL)-1-HYDROXYPROPYL]PHENOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:137 , ASP A:364 , HOH A:604 , HOH A:628
binding site for residue NA A 501
02
AC2
SOFTWARE
TYR A:109 , THR A:110 , SER A:132 , LEU A:135 , GLN B:110 , PHE B:176 , PRO B:177 , GLU B:236 , HOH B:610
binding site for residue QEL B 503
03
AC3
SOFTWARE
HIS C:134 , PHE C:137 , ASP C:364 , HOH C:612
binding site for residue NA C 501
04
AC4
SOFTWARE
TYR C:109 , SER C:132 , ILE C:133 , GLN D:110 , ILE D:111 , PHE D:176 , PRO D:177 , GLU D:236
binding site for residue QEL D 503
05
AC5
SOFTWARE
ASN A:297 , SER A:299 , ALA A:300 , HOH A:656
binding site for Mono-Saccharide NAG A 502 bound to ASN A 297
06
AC6
SOFTWARE
GLN A:40 , ILE A:41 , GLU A:44 , GLN A:48 , LYS A:51 , ASN A:389 , TYR A:392 , HOH A:642 , HOH A:648 , HOH A:656 , HOH A:659
binding site for Poly-Saccharide residues NAG A 503 through MAN A 507 bound to ASN A 389
07
AC7
SOFTWARE
ASN B:74
binding site for Mono-Saccharide NAG B 501 bound to ASN B 74
08
AC8
SOFTWARE
ASN B:341 , HOH B:628
binding site for Mono-Saccharide NAG B 502 bound to ASN B 341
09
AC9
SOFTWARE
ASN C:294 , ASN C:297 , SER C:299 , ALA C:300 , VAL C:355 , HOH C:605
binding site for Mono-Saccharide NAG C 502 bound to ASN C 297
10
AD1
SOFTWARE
ASN D:74
binding site for Mono-Saccharide NAG D 501 bound to ASN D 74
11
AD2
SOFTWARE
ASN D:341 , THR D:343
binding site for Mono-Saccharide NAG D 502 bound to ASN D 341
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Pfam Domains
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Asym.Unit (491 KB)
Header - Asym.Unit
Biol.Unit 1 (245 KB)
Header - Biol.Unit 1
Biol.Unit 2 (242 KB)
Header - Biol.Unit 2
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