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5ES4
Biol. Unit 4
Info
Asym.Unit (2.2 MB)
Biol.Unit 1 (619 KB)
Biol.Unit 2 (557 KB)
Biol.Unit 3 (556 KB)
Biol.Unit 4 (553 KB)
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Title
:
RE-REFINEMENT OF INTEGRIN ALPHAXBETA2 ECTODOMAIN IN THE CLOSED/BENT CONFORMATION
Authors
:
M. Sen, T. A. Springer
Date
:
16 Nov 15 (Deposition) - 06 Apr 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Complement Receptor-4 Alphaxbeta2, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sen, T. A. Springer
Leukocyte Integrin Alpha L Beta 2 Headpiece Structures: The Alpha I Domain, The Pocket For The Internal Ligand, And Concerted Movements Of Its Loops.
Proc. Natl. Acad. Sci. Usa V. 113 2940 2016
[
close entry info
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3ab: ALPHA-D-MANNOSE (MANab)
3ac: ALPHA-D-MANNOSE (MANac)
3ad: ALPHA-D-MANNOSE (MANad)
3ae: ALPHA-D-MANNOSE (MANae)
3af: ALPHA-D-MANNOSE (MANaf)
3ag: ALPHA-D-MANNOSE (MANag)
3ah: ALPHA-D-MANNOSE (MANah)
3ai: ALPHA-D-MANNOSE (MANai)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
5af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
5ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
5ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
5ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
5aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
5ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
5al: N-ACETYL-D-GLUCOSAMINE (NAGal)
5am: N-ACETYL-D-GLUCOSAMINE (NAGam)
5an: N-ACETYL-D-GLUCOSAMINE (NAGan)
5ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
5ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
5aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
5ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
5as: N-ACETYL-D-GLUCOSAMINE (NAGas)
5at: N-ACETYL-D-GLUCOSAMINE (NAGat)
5au: N-ACETYL-D-GLUCOSAMINE (NAGau)
5av: N-ACETYL-D-GLUCOSAMINE (NAGav)
5aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
5ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
5ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
5az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
5bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
5bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
5bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
5be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
5bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
5bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
5bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
5bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MAN
9
Ligand/Ion
ALPHA-D-MANNOSE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AD5 (SOFTWARE)
02: AD6 (SOFTWARE)
03: AD7 (SOFTWARE)
04: AD8 (SOFTWARE)
05: AE1 (SOFTWARE)
06: AE7 (SOFTWARE)
07: AH5 (SOFTWARE)
08: AH6 (SOFTWARE)
09: AH7 (SOFTWARE)
10: AH8 (SOFTWARE)
11: AH9 (SOFTWARE)
12: AI1 (SOFTWARE)
13: AI2 (SOFTWARE)
14: AI3 (SOFTWARE)
15: AI4 (SOFTWARE)
16: AI5 (SOFTWARE)
17: AI6 (SOFTWARE)
18: AI7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD5
SOFTWARE
ASP G:447 , ASP G:449 , ASP G:451 , SER G:453 , ASP G:455
binding site for residue CA G 2005
02
AD6
SOFTWARE
ASP G:511 , ASN G:513 , ASP G:515 , LEU G:517 , ASP G:519
binding site for residue CA G 2006
03
AD7
SOFTWARE
ASP G:574 , THR G:576 , ASP G:578 , LEU G:580 , VAL G:581 , ASP G:582
binding site for residue CA G 2007
04
AD8
SOFTWARE
SER H:116 , ASP H:120 , ASP H:242 , GLU H:325
binding site for residue CA H 2002
05
AE1
SOFTWARE
ASN A:42 , ASN A:70 , NAG A:3042 , ARG G:12
binding site for Poly-Saccharide residues NAG A 3070 through MAN A 3074 bound to ASN A 70
06
AE7
SOFTWARE
SER A:929 , HIS A:930 , VAL A:931 , ASN A:1031 , PRO G:112 , LEU G:115
binding site for Mono-Saccharide NAG A 3031 bound to ASN A 1031
07
AH5
SOFTWARE
ASN G:42 , NAG G:3070
binding site for Mono-Saccharide NAG G 3042 bound to ASN G 42
08
AH6
SOFTWARE
ILE G:38 , ASN G:42 , ASN G:70 , NAG G:3042
binding site for Poly-Saccharide residues NAG G 3070 through MAN G 3074 bound to ASN G 70
09
AH7
SOFTWARE
GLU G:329 , PHE G:354 , SER G:357 , PHE G:371 , ASN G:373 , MET G:374 , SER G:375 , GLN G:376 , ASN G:378
binding site for Poly-Saccharide residues NAG G 3373 through MAN G 3380 bound to ASN G 373
10
AH8
SOFTWARE
ASN G:678
binding site for Mono-Saccharide NAG G 3678 bound to ASN G 678
11
AH9
SOFTWARE
THR G:657 , ASP G:659 , ASN G:716 , PHE G:717 , THR G:718 , TYR G:741
binding site for Poly-Saccharide residues NAG G 3716 through MAN G 3719 bound to ASN G 716
12
AI1
SOFTWARE
SER C:836 , ASN G:880 , LYS G:892
binding site for Poly-Saccharide residues NAG G 3880 through MAN G 3884 bound to ASN G 880
13
AI2
SOFTWARE
TYR G:918 , ASN G:920 , PHE G:921 , ARG H:643 , VAL H:674
binding site for Mono-Saccharide NAG G 3920 bound to ASN G 920
14
AI3
SOFTWARE
PRO A:112 , GLN A:114 , LEU A:115 , SER G:929 , HIS G:930 , VAL G:931 , ASN G:1031
binding site for Mono-Saccharide NAG G 3031 bound to ASN G 1031
15
AI4
SOFTWARE
ASN H:94 , GLN H:390
binding site for Mono-Saccharide NAG H 3094 bound to ASN H 94
16
AI5
SOFTWARE
ASN H:190
binding site for Mono-Saccharide NAG H 3190 bound to ASN H 190
17
AI6
SOFTWARE
ASN H:232
binding site for Mono-Saccharide NAG H 3232 bound to ASN H 232
18
AI7
SOFTWARE
ILE A:254 , PRO A:255 , ASP A:258 , PRO H:616 , ASN H:620
binding site for Mono-Saccharide NAG H 3620 bound to ASN H 620
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (2.2 MB)
Header - Asym.Unit
Biol.Unit 1 (619 KB)
Header - Biol.Unit 1
Biol.Unit 2 (557 KB)
Header - Biol.Unit 2
Biol.Unit 3 (556 KB)
Header - Biol.Unit 3
Biol.Unit 4 (553 KB)
Header - Biol.Unit 4
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