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5ERU
Biol. Unit 1
Info
Asym.Unit (228 KB)
Biol.Unit 1 (437 KB)
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(1)
Title
:
TERNARY COMPLEX OF GEPHE - ADP - MOLYBDENUM CLUSTER
Authors
:
V. B. Kasaragod, H. Schindelin
Date
:
15 Nov 15 (Deposition) - 04 May 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Molybdenum Cluster, Moco, Wco, Moco Biosynthesis, Ternary Complex, Transferase
(Keyword Search:
[
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]
)
Reference
:
V. B. Kasaragod, H. Schindelin
Structural Framework For Metal Incorporation During Molybdenum Cofactor Biosynthesis.
Structure V. 24 782 2016
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: CALCIUM ION (CAa)
4a: MAGNESIUM ION (MGa)
6a: MOLYBDATE ION (MOOa)
5a: MOLYBDENUM ATOM (MOa)
5b: MOLYBDENUM ATOM (MOb)
5c: MOLYBDENUM ATOM (MOc)
5d: MOLYBDENUM ATOM (MOd)
5e: MOLYBDENUM ATOM (MOe)
5f: MOLYBDENUM ATOM (MOf)
5g: MOLYBDENUM ATOM (MOg)
5h: MOLYBDENUM ATOM (MOh)
7a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
7b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
7c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
8a: PHOSPHATE ION (PO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
10
Ligand/Ion
ACETATE ION
2
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
6
MOO
2
Ligand/Ion
MOLYBDATE ION
7
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
8
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:469
binding site for residue ACT A 801
02
AC2
SOFTWARE
ALA A:356 , HOH A:1179
binding site for residue ACT A 802
03
AC3
SOFTWARE
HOH A:1074 , HOH A:1118
binding site for residue ACT A 803
04
AC4
SOFTWARE
MPD A:808 , HOH A:916
binding site for residue ACT A 805
05
AC5
SOFTWARE
MET A:326 , ASP A:327 , PHE A:330 , PRO A:654 , ILE A:656 , MET A:731 , HOH A:939
binding site for residue MPD A 806
06
AC6
SOFTWARE
ASN A:512 , GLU A:514 , HOH A:904 , HOH A:1190 , HOH A:1252
binding site for residue MPD A 807
07
AC7
SOFTWARE
ARG A:675 , ACT A:805 , HOH A:928 , HOH A:977
binding site for residue MPD A 808
08
AC8
SOFTWARE
ADP A:810 , HOH A:932 , HOH A:984 , HOH A:1012 , HOH A:1053 , HOH A:1071 , HOH A:1121
binding site for residue CA A 809
09
AC9
SOFTWARE
SER A:505 , GLU A:509 , LEU A:510 , ILE A:522 , ASP A:524 , SER A:525 , ASN A:526 , GLY A:572 , GLY A:573 , VAL A:574 , SER A:575 , ASP A:580 , PRO A:625 , GLY A:626 , ASN A:627 , PRO A:628 , CA A:809 , MG A:821 , HOH A:932 , HOH A:972 , HOH A:1026 , HOH A:1077 , HOH A:1081 , HOH A:1111 , HOH A:1122 , HOH A:1149
binding site for residue ADP A 810
10
AD1
SOFTWARE
ARG A:564 , LYS A:619 , HOH A:910
binding site for residue PO4 A 811
11
AD2
SOFTWARE
ARG A:670 , MO A:813 , MO A:814 , MO A:816 , MO A:817 , MO A:819 , MOO A:820 , HOH A:1123
binding site for residue MO A 812
12
AD3
SOFTWARE
LEU A:605 , MO A:812 , MO A:814 , MO A:816
binding site for residue MO A 813
13
AD4
SOFTWARE
MO A:812 , MO A:813 , MO A:819 , MOO A:820 , HOH A:1219
binding site for residue MO A 814
14
AD5
SOFTWARE
MO A:817 , MO A:818 , MO A:819 , MOO A:820
binding site for residue MO A 815
15
AD6
SOFTWARE
MO A:812 , MO A:813 , MO A:817 , MO A:819 , HOH A:1123
binding site for residue MO A 816
16
AD7
SOFTWARE
LYS A:602 , MO A:812 , MO A:815 , MO A:816 , MOO A:820 , HOH A:1123
binding site for residue MO A 817
17
AD8
SOFTWARE
MO A:815 , MO A:819
binding site for residue MO A 818
18
AD9
SOFTWARE
MO A:812 , MO A:814 , MO A:815 , MO A:816 , MO A:818
binding site for residue MO A 819
19
AE1
SOFTWARE
GLY A:604 , LEU A:605 , PRO A:606 , PRO A:625 , ASN A:627 , SER A:630 , MO A:812 , MO A:814 , MO A:815 , MO A:817 , HOH A:972
binding site for residue MOO A 820
20
AE2
SOFTWARE
ASP A:580 , ADP A:810 , HOH A:932 , HOH A:1026
binding site for residue MG A 821
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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Chain A
Asymmetric Unit 1
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