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5ERT
Biol. Unit 1
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Asym.Unit (214 KB)
Biol.Unit 1 (413 KB)
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(1)
Title
:
GEPHE IN COMPLEX WITH MN(2+) - ADP
Authors
:
V. B. Kasaragod, H. Schindelin
Date
:
15 Nov 15 (Deposition) - 04 May 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Moco, Wco, Moco Biosyntheis, Adp Complex, Manganese, Transferase
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Reference
:
V. B. Kasaragod, H. Schindelin
Structural Framework For Metal Incorporation During Molybdenum Cofactor Biosynthesis.
Structure V. 24 782 2016
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:505 , GLU A:509 , LEU A:510 , ILE A:522 , ASP A:524 , SER A:525 , ASN A:526 , GLY A:572 , GLY A:573 , VAL A:574 , SER A:575 , ASP A:580 , PRO A:625 , GLY A:626 , ASN A:627 , MN A:802 , MN A:803 , HOH A:946 , HOH A:994 , HOH A:1002 , HOH A:1015
binding site for residue ADP A 801
2
AC2
SOFTWARE
ADP A:801 , HOH A:930 , HOH A:945 , HOH A:964 , HOH A:1026 , HOH A:1157
binding site for residue MN A 802
3
AC3
SOFTWARE
ASP A:580 , ADP A:801
binding site for residue MN A 803
4
AC4
SOFTWARE
LEU A:736 , HOH A:903
binding site for residue PO4 A 804
5
AC5
SOFTWARE
ASP A:566 , LYS A:619
binding site for residue PO4 A 805
6
AC6
SOFTWARE
LEU A:323 , PHE A:600
binding site for residue ACT A 806
7
AC7
SOFTWARE
MET A:711 , HOH A:985
binding site for residue ACT A 807
8
AC8
SOFTWARE
MET A:336
binding site for residue ACT A 808
9
AC9
SOFTWARE
PRO A:628 , ARG A:675 , HOH A:947
binding site for residue MPD A 809
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Pfam Domains
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