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5ERP
Asym. Unit
Info
Asym.Unit (299 KB)
Biol.Unit 1 (285 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DESMOCOLLIN-2 ECTODOMAIN FRAGMENT EC2-5
Authors
:
O. J. Harrison, J. Brasch, L. Shapiro
Date
:
14 Nov 15 (Deposition) - 15 Jun 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Extracellular Cadherin Domain, Cell Adhesion, Cell Surface, Desmosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, J. Brasch, G. Lasso, P. S. Katsamba, G. Ahlsen, B. Honig L. Shapiro
Structural Basis Of Adhesive Binding By Desmocollins And Desmogleins.
Proc. Natl. Acad. Sci. Usa V. 113 7160 2016
[
close entry info
]
Hetero Components
(6, 51)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
CA
21
Ligand/Ion
CALCIUM ION
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
MAN
11
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , HIS A:142 , ASP A:192
binding site for residue CA A 811
02
AC2
SOFTWARE
GLU A:119 , ASP A:177 , GLU A:179 , ASP A:215 , HOH A:901 , HOH A:935
binding site for residue CA A 812
03
AC3
SOFTWARE
GLU A:119 , GLU A:179 , ASP A:212 , VAL A:213 , ASP A:215 , ASP A:247
binding site for residue CA A 813
04
AC4
SOFTWARE
GLU A:231 , ASN A:232 , ASN A:289 , GLU A:291 , GLU A:332 , HOH A:938
binding site for residue CA A 814
05
AC5
SOFTWARE
GLU A:231 , GLU A:291 , ASP A:329 , GLN A:330 , GLU A:332 , GLU A:364
binding site for residue CA A 815
06
AC6
SOFTWARE
ASN A:214 , HIS A:216 , ASP A:245 , ASP A:247 , ASN A:253 , ASN A:304
binding site for residue CA A 816
07
AC7
SOFTWARE
GLU A:347 , GLU A:401 , ASP A:434 , VAL A:435 , ASP A:437 , ASP A:465
binding site for residue CA A 817
08
AC8
SOFTWARE
GLU A:347 , ASP A:399 , GLU A:401 , ASP A:437 , HOH A:923
binding site for residue CA A 818
09
AC9
SOFTWARE
ASP A:331 , GLU A:332 , ASP A:362 , GLU A:364 , HOH A:912
binding site for residue CA A 819
10
AD1
SOFTWARE
ASN A:436 , ASN A:438 , ASP A:463 , ASP A:465 , HIS A:469 , ASP A:519
binding site for residue CA A 820
11
AD2
SOFTWARE
CYS A:131
binding site for residue SO4 A 821
12
AD3
SOFTWARE
VAL A:153 , LYS A:183 , GLN A:185
binding site for residue EDO A 822
13
AD4
SOFTWARE
ASP A:103 , GLN A:485
binding site for residue EDO A 823
14
AD5
SOFTWARE
ASN A:268 , GLU A:292 , LYS A:293
binding site for residue EDO A 824
15
AD6
SOFTWARE
ASN B:102 , ASN B:104 , ASP B:134 , ASP B:136 , HIS B:142 , ASP B:192
binding site for residue CA B 614
16
AD7
SOFTWARE
GLU B:119 , GLU B:179 , ASP B:212 , VAL B:213 , ASP B:215 , ASP B:247
binding site for residue CA B 615
17
AD8
SOFTWARE
GLU B:119 , ASP B:177 , GLU B:179 , ASP B:215 , HOH B:706 , HOH B:732
binding site for residue CA B 616
18
AD9
SOFTWARE
ASN B:214 , HIS B:216 , ASP B:245 , ASP B:247 , ASN B:253 , ASN B:304
binding site for residue CA B 617
19
AE1
SOFTWARE
GLU B:231 , ASN B:289 , GLU B:291 , GLU B:332 , HOH B:702
binding site for residue CA B 618
20
AE2
SOFTWARE
GLU B:231 , GLU B:291 , ASP B:329 , GLN B:330 , GLU B:332 , GLU B:364
binding site for residue CA B 619
21
AE3
SOFTWARE
ASP B:331 , GLU B:332 , ASP B:362 , GLU B:364 , HOH B:721
binding site for residue CA B 620
22
AE4
SOFTWARE
GLU B:347 , ASP B:399 , GLU B:401 , ASP B:437 , HOH B:714 , HOH B:731
binding site for residue CA B 621
23
AE5
SOFTWARE
GLU B:347 , GLU B:401 , ASP B:434 , VAL B:435 , ASP B:437 , ASP B:465
binding site for residue CA B 622
24
AE6
SOFTWARE
ASN B:436 , ASN B:438 , ASP B:463 , ASP B:465 , HIS B:469 , ASP B:519
binding site for residue CA B 623
25
AE7
SOFTWARE
GLU A:279 , ASP B:329
binding site for residue CA B 624
26
AE8
SOFTWARE
VAL B:272 , CYS B:283
binding site for residue SO4 B 625
27
AE9
SOFTWARE
ILE B:260 , LEU B:261 , ASN B:264
binding site for residue EDO B 626
28
AF1
SOFTWARE
ILE B:340 , ASN B:411 , GLY B:429 , NAG B:602
binding site for residue EDO B 627
29
AF2
SOFTWARE
ILE A:150 , GLY A:151 , LEU A:186 , ILE A:188 , THR A:203 , SER A:204 , MAN A:802
binding site for Poly-Saccharide residues LYS A 187 through MAN A 801 bound to THR A 203
30
AF3
SOFTWARE
THR A:205 , MAN A:801
binding site for Mono-Saccharide MAN A 802 bound to THR A 205
31
AF4
SOFTWARE
ASN A:257
binding site for Mono-Saccharide NAG A 805 bound to ASN A 257
32
AF5
SOFTWARE
LYS A:406 , ASN A:407 , ILE A:409 , ASN A:411
binding site for Poly-Saccharide residues NAG A 806 through MAN A 809 bound to ASN A 411
33
AF6
SOFTWARE
THR A:423 , PHE B:395
binding site for Mono-Saccharide MAN A 803 bound to THR A 423
34
AF7
SOFTWARE
THR A:425
binding site for Mono-Saccharide MAN A 804 bound to THR A 425
35
AF8
SOFTWARE
GLU A:458 , ILE A:493 , ASN A:494 , THR A:496 , ALA A:498
binding site for Poly-Saccharide residues ALA A 497 through NAG A 810 bound to ASN A 494
36
AF9
SOFTWARE
LYS B:187 , THR B:203 , MAN B:610
binding site for Mono-Saccharide MAN B 611 bound to THR B 203
37
AG1
SOFTWARE
THR B:112 , THR B:205 , MAN B:611
binding site for Mono-Saccharide MAN B 610 bound to THR B 205
38
AG2
SOFTWARE
ASN B:257
binding site for Mono-Saccharide NAG B 601 bound to ASN B 257
39
AG3
SOFTWARE
LYS B:406 , ASN B:407 , ILE B:409 , ASN B:411 , EDO B:627
binding site for Poly-Saccharide residues NAG B 602 through MAN B 605 bound to ASN B 411
40
AG4
SOFTWARE
PHE A:395 , THR B:423 , MAN B:613
binding site for Mono-Saccharide MAN B 612 bound to THR B 423
41
AG5
SOFTWARE
THR B:425 , MAN B:612 , HOH B:704
binding site for Mono-Saccharide MAN B 613 bound to THR B 425
42
AG6
SOFTWARE
GLU B:458 , VAL B:460 , ASN B:494 , ALA B:497
binding site for Poly-Saccharide residues NAG B 606 through MAN B 609 bound to ASN B 494
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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