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5ERD
Asym. Unit
Info
Asym.Unit (383 KB)
Biol.Unit 1 (367 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DESMOGLEIN-2 ECTODOMAIN
Authors
:
J. Brasch, O. J. Harrison, L. Shapiro
Date
:
13 Nov 15 (Deposition) - 22 Jun 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Extracellular Cadherin Domain, Cell Adhesion, Desmosome, Cell Surface
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, J. Brasch, G. Lasso, P. S. Katsamba, G. Ahlsen, B. Honig L. Shapiro
Structural Basis Of Adhesive Binding By Desmocollins And Desmogleins.
Proc. Natl. Acad. Sci. Usa V. 113 7160 2016
[
close entry info
]
Hetero Components
(6, 51)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
3a: 1,2-ETHANEDIOL (EDOa)
4a: ALPHA-L-FUCOSE (FUCa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
22
Ligand/Ion
CALCIUM ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
17
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:11 , GLU A:71 , ASP A:102 , ILE A:103 , ASP A:105 , ASP A:138
binding site for residue CA A 616
02
AC2
SOFTWARE
GLU A:11 , ASP A:69 , GLU A:71 , ASP A:105 , HOH A:754
binding site for residue CA A 617
03
AC3
SOFTWARE
ASN A:104 , ASN A:106 , ASP A:136 , ASP A:138 , ASN A:144 , ASP A:194
binding site for residue CA A 618
04
AC4
SOFTWARE
GLU A:121 , GLU A:181 , ASP A:215 , VAL A:216 , ASP A:218 , ASP A:250 , CA A:620
binding site for residue CA A 619
05
AC5
SOFTWARE
GLU A:121 , ASP A:179 , GLU A:181 , ASP A:218 , ASN A:219 , CA A:619 , HOH A:726
binding site for residue CA A 620
06
AC6
SOFTWARE
ASN A:217 , ASN A:219 , ASP A:248 , ASP A:250 , ASN A:256 , ASN A:307
binding site for residue CA A 621
07
AC7
SOFTWARE
GLU A:350 , GLU A:407 , ASP A:442 , ILE A:443 , ASP A:445 , ASP A:472 , CA A:626
binding site for residue CA A 622
08
AC8
SOFTWARE
ASN A:444 , ASN A:446 , ASP A:470 , ASP A:472 , ASN A:476 , ASP A:525
binding site for residue CA A 623
09
AC9
SOFTWARE
GLU A:234 , GLU A:294 , ASN A:332 , VAL A:333 , GLU A:335 , ASP A:370
binding site for residue CA A 624
10
AD1
SOFTWARE
GLU A:234 , ASP A:292 , GLU A:294 , GLU A:335 , GLU A:369 , HOH A:701
binding site for residue CA A 625
11
AD2
SOFTWARE
GLU A:350 , ASP A:405 , GLU A:407 , ASP A:445 , CA A:622 , HOH A:718
binding site for residue CA A 626
12
AD3
SOFTWARE
ARG A:86 , GLY A:87 , THR B:371
binding site for residue EDO A 627
13
AD4
SOFTWARE
GLU B:11 , GLU B:71 , ASP B:102 , ILE B:103 , ASP B:105 , ASP B:138
binding site for residue CA B 914
14
AD5
SOFTWARE
ASN B:104 , ASN B:106 , ASP B:136 , ASP B:138 , ASN B:144 , ASP B:194
binding site for residue CA B 915
15
AD6
SOFTWARE
GLU B:121 , GLU B:181 , ASP B:215 , VAL B:216 , ASP B:218 , ASP B:250
binding site for residue CA B 916
16
AD7
SOFTWARE
ASN B:217 , ASN B:219 , ASP B:248 , ASP B:250 , ASN B:256 , ASN B:307
binding site for residue CA B 917
17
AD8
SOFTWARE
GLU B:350 , ASP B:405 , GLU B:407 , ASP B:445 , ASN B:446 , CA B:924 , HOH B:1015
binding site for residue CA B 918
18
AD9
SOFTWARE
ASN B:444 , ASN B:446 , ASP B:470 , ASP B:472 , ASN B:476 , ASP B:525
binding site for residue CA B 919
19
AE1
SOFTWARE
GLU B:121 , ASP B:179 , GLU B:181 , ASP B:218 , HOH B:1014 , HOH B:1025
binding site for residue CA B 920
20
AE2
SOFTWARE
GLU B:234 , GLU B:294 , ASN B:332 , VAL B:333 , GLU B:335 , ASP B:370
binding site for residue CA B 921
21
AE3
SOFTWARE
GLU B:11 , ASP B:69 , GLU B:71 , ASP B:105 , HOH B:1058
binding site for residue CA B 922
22
AE4
SOFTWARE
GLU B:234 , ASP B:292 , GLU B:294 , GLU B:335 , GLU B:369 , HOH B:1002
binding site for residue CA B 923
23
AE5
SOFTWARE
GLU B:350 , GLU B:407 , ASP B:442 , ILE B:443 , ASP B:445 , ASP B:472 , CA B:918
binding site for residue CA B 924
24
AE6
SOFTWARE
ASN A:19 , ASN A:63
binding site for Poly-Saccharide residues NAG A 602 through BMA A 604 bound to ASN A 63
25
AE7
SOFTWARE
ASN A:133
binding site for Poly-Saccharide residues NAG A 605 through BMA A 607 bound to ASN A 133
26
AE8
SOFTWARE
ASN A:260 , PHE A:261 , THR A:262
binding site for Mono-Saccharide NAG A 608 bound to ASN A 260
27
AE9
SOFTWARE
ASN A:413
binding site for Mono-Saccharide NAG A 601 bound to ASN A 413
28
AF1
SOFTWARE
ARG A:429 , THR A:431 , GLU B:233
binding site for Mono-Saccharide MAN A 613 bound to THR A 431
29
AF2
SOFTWARE
THR A:433
binding site for Mono-Saccharide MAN A 614 bound to THR A 433
30
AF3
SOFTWARE
SER A:342 , LYS A:419 , THR A:433 , THR A:435
binding site for Mono-Saccharide MAN A 615 bound to THR A 435
31
AF4
SOFTWARE
ASN A:465 , THR A:467 , ARG A:499 , GLU A:501 , SER A:504
binding site for Poly-Saccharide residues NAG A 609 through FUC A 612 bound to ASN A 465
32
AF5
SOFTWARE
ASN B:19 , PRO B:20 , ASN B:63
binding site for Poly-Saccharide residues NAG B 904 through NAG B 905 bound to ASN B 63
33
AF6
SOFTWARE
PHE B:115 , LYS B:131 , ASN B:133
binding site for Poly-Saccharide residues NAG B 906 through BMA B 908 bound to ASN B 133
34
AF7
SOFTWARE
ASN B:260 , PHE B:261 , THR B:262 , HOH B:1003
binding site for Poly-Saccharide residues NAG B 909 through NAG B 910 bound to ASN B 260
35
AF8
SOFTWARE
ASN B:413
binding site for Mono-Saccharide NAG B 911 bound to ASN B 413
36
AF9
SOFTWARE
ASN A:235 , GLN A:236 , VAL A:237 , GLU A:290 , ARG B:429 , THR B:431
binding site for Mono-Saccharide MAN B 901 bound to THR B 431
37
AG1
SOFTWARE
THR B:431 , THR B:433
binding site for Mono-Saccharide MAN B 902 bound to THR B 433
38
AG2
SOFTWARE
SER B:342 , LYS B:419 , THR B:435
binding site for Mono-Saccharide MAN B 903 bound to THR B 435
39
AG3
SOFTWARE
LYS A:399 , ASN B:465 , GLU B:501 , SER B:504 , LEU B:506
binding site for Poly-Saccharide residues NAG B 912 through NAG B 913 bound to ASN B 465
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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[
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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