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5EQX
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DESMOGLEIN-3 ECTODOMAIN
Authors
:
O. J. Harrison, J. Brasch, L. Shapiro
Date
:
13 Nov 15 (Deposition) - 15 Jun 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Extracellular Cadherin Domain, Cell Adhesion, Cell Surface, Desmosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, J. Brasch, G. Lasso, P. S. Katsamba, G. Ahlsen, B. Honig L. Shapiro
Structural Basis Of Adhesive Binding By Desmocollins And Desmogleins.
Proc. Natl. Acad. Sci. Usa V. 113 7160 2016
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
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Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:11 , GLU A:69 , ASP A:100 , ILE A:101 , ASP A:103 , ASP A:136
binding site for residue CA A 604
02
AC2
SOFTWARE
ASN A:212 , ASN A:214 , ASP A:243 , ASP A:245 , ASN A:251 , ASN A:302
binding site for residue CA A 605
03
AC3
SOFTWARE
GLU A:11 , ASP A:67 , GLU A:69 , ASP A:103 , ASN A:104 , HOH A:746
binding site for residue CA A 606
04
AC4
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:142 , ASP A:192
binding site for residue CA A 607
05
AC5
SOFTWARE
GLU A:119 , ASP A:177 , GLU A:179 , ASP A:213
binding site for residue CA A 608
06
AC6
SOFTWARE
GLU A:119 , GLU A:179 , ASP A:210 , VAL A:211 , ASP A:213 , ASP A:245
binding site for residue CA A 609
07
AC7
SOFTWARE
GLU A:229 , GLU A:289 , ASN A:327 , VAL A:328 , GLU A:330 , ASP A:366
binding site for residue CA A 610
08
AC8
SOFTWARE
GLU A:229 , ASP A:287 , GLU A:289 , GLU A:330
binding site for residue CA A 611
09
AC9
SOFTWARE
ASN A:19 , ASN A:61
binding site for Poly-Saccharide residues NAG A 601 through NAG A 602 bound to ASN A 61
10
AD1
SOFTWARE
ASN A:131
binding site for Mono-Saccharide NAG A 603 bound to ASN A 131
11
AD2
SOFTWARE
GLY A:425 , THR A:427 , MAN A:612
binding site for Mono-Saccharide MAN A 614 bound to THR A 427
12
AD3
SOFTWARE
GLU A:416 , THR A:427 , THR A:429 , MAN A:613 , MAN A:614
binding site for Mono-Saccharide MAN A 612 bound to THR A 429
13
AD4
SOFTWARE
ALA A:337 , GLU A:416 , THR A:429 , THR A:431 , MAN A:612
binding site for Mono-Saccharide MAN A 613 bound to THR A 431
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (150 KB)
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