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5ELF
Biol. Unit 2
Info
Asym.Unit (218 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
CHOLERA TOXIN EL TOR B-PENTAMER IN COMPLEX WITH A-PENTASACCHARIDE
Authors
:
J. E. Heggelund, D. Burschowsky, U. Krengel
Date
:
04 Nov 15 (Deposition) - 30 Mar 16 (Release) - 27 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Cholera Toxin B-Pentamer, Human Milk Oligosaccharide, Complex, Blood Group Oligosaccharide/Antigen, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Heggelund, D. Burschowsky, V. A. Bjrnestad, V. Hodnik, G. Anderluh, U. Krengel
High-Resolution Crystal Structures Elucidate The Molecular Basis Of Cholera Blood Group Dependence.
Plos Pathog. V. 12 05567 2016
[
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Hetero Components
(6, 23)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
1c: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gc)
1d: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gd)
1e: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ge)
1f: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gf)
1g: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gg)
2a: BICINE (BCNa)
2b: BICINE (BCNb)
2c: BICINE (BCNc)
2d: BICINE (BCNd)
2e: BICINE (BCNe)
2f: BICINE (BCNf)
2g: BICINE (BCNg)
2h: BICINE (BCNh)
2i: BICINE (BCNi)
2j: BICINE (BCNj)
3a: BETA-D-GLUCOSE (BGCa)
3b: BETA-D-GLUCOSE (BGCb)
3c: BETA-D-GLUCOSE (BGCc)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
4c: CALCIUM ION (CAc)
4d: CALCIUM ION (CAd)
4e: CALCIUM ION (CAe)
4f: CALCIUM ION (CAf)
4g: CALCIUM ION (CAg)
4h: CALCIUM ION (CAh)
4i: CALCIUM ION (CAi)
4j: CALCIUM ION (CAj)
5a: ALPHA-L-FUCOSE (FUCa)
5b: ALPHA-L-FUCOSE (FUCb)
5c: ALPHA-L-FUCOSE (FUCc)
5d: ALPHA-L-FUCOSE (FUCd)
5e: ALPHA-L-FUCOSE (FUCe)
5f: ALPHA-L-FUCOSE (FUCf)
5g: ALPHA-L-FUCOSE (FUCg)
5h: ALPHA-L-FUCOSE (FUCh)
5i: ALPHA-L-FUCOSE (FUCi)
5j: ALPHA-L-FUCOSE (FUCj)
5k: ALPHA-L-FUCOSE (FUCk)
5l: ALPHA-L-FUCOSE (FUCl)
5m: ALPHA-L-FUCOSE (FUCm)
5n: ALPHA-L-FUCOSE (FUCn)
5o: ALPHA-L-FUCOSE (FUCo)
5p: ALPHA-L-FUCOSE (FUCp)
6a: BETA-D-GALACTOSE (GALa)
6b: BETA-D-GALACTOSE (GALb)
6c: BETA-D-GALACTOSE (GALc)
6d: BETA-D-GALACTOSE (GALd)
6e: BETA-D-GALACTOSE (GALe)
6f: BETA-D-GALACTOSE (GALf)
6g: BETA-D-GALACTOSE (GALg)
7a: ALPHA-D-GLUCOSE (GLCa)
7b: ALPHA-D-GLUCOSE (GLCb)
7c: ALPHA-D-GLUCOSE (GLCc)
7d: ALPHA-D-GLUCOSE (GLCd)
7e: ALPHA-D-GLUCOSE (GLCe)
7f: ALPHA-D-GLUCOSE (GLCf)
8a: TETRAETHYLENE GLYCOL (PG4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A2G
4
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
BCN
-1
Ligand/Ion
BICINE
3
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
4
CA
-1
Ligand/Ion
CALCIUM ION
5
FUC
9
Ligand/Ion
ALPHA-L-FUCOSE
6
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
7
GLC
3
Ligand/Ion
ALPHA-D-GLUCOSE
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
12: AD4 (SOFTWARE)
13: AD5 (SOFTWARE)
14: AD6 (SOFTWARE)
15: AD7 (SOFTWARE)
16: AD8 (SOFTWARE)
17: AE1 (SOFTWARE)
18: AE2 (SOFTWARE)
19: AE3 (SOFTWARE)
20: AE4 (SOFTWARE)
21: AE5 (SOFTWARE)
22: AE6 (SOFTWARE)
23: AE7 (SOFTWARE)
24: AE9 (SOFTWARE)
25: AF1 (SOFTWARE)
26: AF2 (SOFTWARE)
27: AF3 (SOFTWARE)
28: AF4 (SOFTWARE)
29: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:79 , BCN A:202 , GLU F:79 , ASN J:103
binding site for residue CA A 201
02
AC2
SOFTWARE
GLU A:79 , CA A:201 , HOH A:321 , HOH A:342 , TYR F:76 , LEU F:77 , GLU F:79 , HOH F:324 , ALA J:80 , LYS J:81 , ASN J:103
binding site for residue BCN A 202
03
AC3
SOFTWARE
GLU A:79 , BCN A:204 , ASN E:103 , GLU F:79
binding site for residue CA A 203
04
AC4
SOFTWARE
TYR A:76 , LEU A:77 , GLU A:79 , CA A:203 , HOH A:311 , HOH A:321 , HOH A:329 , HOH A:363 , HOH A:367 , ALA E:80 , LYS E:81 , ASN E:103 , LYS F:23 , GLU F:79
binding site for residue BCN A 204
05
AC5
SOFTWARE
ALA A:80 , LYS A:81 , ASN A:103 , TYR B:76 , LEU B:77 , GLU B:79 , CA B:205 , HOH B:303 , HOH B:305 , HOH B:372 , GLU J:79 , HOH J:367
binding site for residue BCN B 201
06
AC6
SOFTWARE
GLU B:79 , BCN B:204 , HOH I:327 , GLU J:79
binding site for residue CA B 202
07
AC8
SOFTWARE
GLU B:79 , CA B:202 , HOH B:322 , HOH B:365 , HOH B:372 , ALA I:80 , LYS I:81 , ASN I:103 , HOH I:327 , TYR J:76 , LEU J:77 , GLU J:79 , HOH J:319
binding site for residue BCN B 204
08
AC9
SOFTWARE
GLU B:79 , BCN B:201 , GLU J:79 , HOH J:367
binding site for residue CA B 205
09
AD1
SOFTWARE
GLU C:79 , BCN C:203 , HOH C:345 , GLU I:79
binding site for residue CA C 201
10
AD2
SOFTWARE
ALA B:80 , LYS B:81 , ASN B:103 , HOH B:317 , HOH B:341 , LYS C:23 , TYR C:76 , LEU C:77 , GLU C:79 , CA C:204 , HOH C:301 , HOH C:304 , HOH C:311 , GLU I:79
binding site for residue BCN C 202
11
AD3
SOFTWARE
GLU C:79 , CA C:201 , HOH C:304 , HOH C:313 , HOH C:345 , ALA H:80 , LYS H:81 , ASN H:103 , TYR I:76 , LEU I:77 , GLU I:79 , HOH I:317
binding site for residue BCN C 203
12
AD4
SOFTWARE
HOH B:341 , GLU C:79 , BCN C:202 , GLU I:79
binding site for residue CA C 204
13
AD5
SOFTWARE
HOH C:370 , GLU D:79 , BCN D:203 , GLU H:79
binding site for residue CA D 201
14
AD6
SOFTWARE
ALA C:80 , LYS C:81 , ASN C:103 , HOH C:364 , TYR D:76 , LEU D:77 , GLU D:79 , CA D:204 , HOH D:317 , HOH D:341 , LYS H:23 , GLU H:79
binding site for residue BCN D 202
15
AD7
SOFTWARE
HOH C:370 , LYS D:23 , GLU D:79 , CA D:201 , ALA G:80 , LYS G:81 , ASN G:103 , TYR H:76 , LEU H:77 , GLU H:79 , HOH H:328
binding site for residue BCN D 203
16
AD8
SOFTWARE
ASN C:103 , GLU D:79 , BCN D:202 , GLU H:79
binding site for residue CA D 204
17
AE1
SOFTWARE
LYS D:81 , ASN D:103 , TYR E:76 , LEU E:77 , GLU E:79 , CA E:204 , HOH E:304 , HOH E:310 , LYS G:23 , GLU G:79 , HOH G:304
binding site for residue BCN E 201
18
AE2
SOFTWARE
GLU E:79 , BCN E:203 , HOH E:303 , GLU G:79
binding site for residue CA E 202
19
AE3
SOFTWARE
GLU E:79 , CA E:202 , HOH E:303 , ALA F:80 , LYS F:81 , ASN F:103 , TYR G:76 , LEU G:77 , GLU G:79 , HOH G:312 , HOH G:340
binding site for residue BCN E 203
20
AE4
SOFTWARE
GLU E:79 , BCN E:201 , GLU G:79 , HOH G:304
binding site for residue CA E 204
21
AE5
SOFTWARE
LYS F:34 , HOH F:367 , ALA H:10 , GLU H:11 , TYR H:12 , HIS H:13 , GLU J:11 , TYR J:12
binding site for residue PG4 F 201
22
AE6
SOFTWARE
GLY G:45 , GAL G:202 , FUC G:204 , FUC G:205 , GLC G:206 , HOH G:301 , HOH G:303 , HOH G:331 , HOH G:386 , HOH G:395 , ASN J:90
binding site for residue BGC G 201
23
AE7
SOFTWARE
GLN G:3 , ILE H:47 , PHE H:48 , PRO H:93 , HIS H:94 , HOH H:302 , HOH H:305 , HOH H:349
binding site for residue FUC H 201
24
AE9
SOFTWARE
GLN A:16 , ILE A:17 , TYR A:18 , ASN A:44 , GLY A:45 , ALA A:46 , ILE A:47 , PHE A:48 , PRO A:93 , HIS A:94 , HOH A:366 , GLN C:3 , GLN D:16 , ILE D:17 , TYR D:18 , ASN D:44 , GLY D:45 , ALA D:46 , ILE D:47 , PHE D:48 , PRO D:93 , HIS D:94 , GLC D:210 , HOH D:301 , HOH D:304 , HOH D:305 , HOH D:306 , HOH D:308 , HOH D:313 , HOH D:315 , HOH D:320 , HOH D:321 , HOH D:322 , HOH D:333 , HOH D:337 , HOH D:350 , HOH D:357 , HOH D:366 , HOH D:386 , GLN E:3 , FUC E:208 , THR I:6 , ASN I:21 , GLU I:83 , LYS I:84 , HOH I:301
binding site for Poly-Saccharide residues BGC D 205 through FUC D 209
25
AF1
SOFTWARE
LYS A:43 , ASN A:44 , GLY A:45 , GLC A:205 , GLN C:3 , GLN D:3 , GLN D:16 , ILE D:17 , TYR D:18 , ASN D:44 , GLY D:45 , ALA D:46 , ILE D:47 , PHE D:48 , PRO D:93 , HIS D:94 , GLC D:210 , HOH D:301 , HOH D:304 , HOH D:305 , HOH D:306 , HOH D:308 , HOH D:313 , HOH D:315 , HOH D:320 , HOH D:321 , HOH D:322 , HOH D:333 , HOH D:337 , HOH D:350 , HOH D:357 , HOH D:366 , HOH D:386 , GLN E:16 , ILE E:17 , TYR E:18 , ASN E:44 , GLY E:45 , ALA E:46 , ILE E:47 , PHE E:48 , PRO E:93 , HIS E:94 , HOH E:315 , HOH E:375 , THR I:6 , ASN I:21 , GLU I:83 , LYS I:84 , HOH I:301
binding site for Poly-Saccharide residues GLC E 205 through FUC E 209
26
AF2
SOFTWARE
LYS A:43 , ASN A:44 , GLY A:45 , GLC A:205 , GLN E:16 , ILE E:17 , TYR E:18 , ASN E:44 , GLY E:45 , ALA E:46 , ILE E:47 , GLU E:79 , HIS E:94 , BCN E:201 , FUC E:209 , HOH E:303 , HOH E:315 , HOH E:375 , GLN F:16 , ILE F:17 , TYR F:18 , ASN F:44 , GLY F:45 , ALA F:46 , ILE F:47 , PHE F:48 , ALA F:80 , LYS F:81 , PRO F:93 , HIS F:94 , ASN F:103 , HOH F:302 , HOH F:310 , HOH F:316 , HOH F:317 , HOH F:318 , HOH F:326 , HOH F:385 , HOH F:391 , TYR G:76 , LEU G:77 , GLU G:79 , HOH G:304 , HOH G:312 , HOH G:340 , GLN J:3
binding site for Poly-Saccharide residues BGC F 202 through FUC F 206
27
AF3
SOFTWARE
GLN F:3 , GLN F:16 , ILE F:17 , TYR F:18 , ASN F:44 , GLY F:45 , ALA F:46 , ILE F:47 , PHE F:48 , PRO F:93 , HIS F:94 , HOH F:302 , HOH F:310 , HOH F:316 , HOH F:317 , HOH F:318 , HOH F:326 , HOH F:385 , HOH F:391 , GLN G:16 , ILE G:17 , TYR G:18 , ASN G:44 , GLY G:45 , ALA G:46 , ILE G:47 , PHE G:48 , THR G:92 , PRO G:93 , HIS G:94 , BGC G:201 , HOH G:301 , HOH G:302 , HOH G:303 , HOH G:308 , HOH G:321 , HOH G:345 , HOH G:356 , HOH G:386 , HOH G:389 , HOH G:392 , HOH G:395 , THR I:1 , GLN J:3 , SER J:55 , GLN J:56 , ASN J:90 , LYS J:91 , THR J:92 , HOH J:327
binding site for Poly-Saccharide residues GAL G 202 through GLC G 206
28
AF4
SOFTWARE
GLN F:3 , ASP F:59 , LYS F:63 , GLN G:16 , ILE G:17 , TYR G:18 , ASN G:44 , GLY G:45 , ALA G:46 , ILE G:47 , PHE G:48 , ASP G:59 , THR G:92 , PRO G:93 , HIS G:94 , HOH G:301 , HOH G:302 , HOH G:303 , HOH G:308 , HOH G:321 , HOH G:331 , HOH G:345 , HOH G:356 , HOH G:386 , HOH G:389 , HOH G:392 , HOH G:395 , GLN H:3 , THR I:1 , GLN I:16 , TYR I:18 , ASN I:44 , GLY I:45 , ALA I:46 , ILE I:47 , PRO I:93 , HIS I:94 , HOH I:303 , HOH I:305 , HOH I:320 , HOH I:322 , HOH I:358 , HOH I:362 , HOH I:363 , HOH I:385 , HOH I:389 , HOH I:396 , SER J:55 , GLN J:56 , ASN J:90 , LYS J:91 , THR J:92 , HOH J:327
binding site for Poly-Saccharide residues GLC I 201 through FUC I 205
29
AF5
SOFTWARE
LYS D:84 , HOH D:332 , ASP F:59 , LYS F:63 , ASP G:59 , GLN H:3 , GLN I:3 , GLN I:16 , TYR I:18 , ASN I:44 , GLY I:45 , ALA I:46 , ILE I:47 , PRO I:93 , HIS I:94 , HOH I:303 , HOH I:305 , HOH I:320 , HOH I:322 , HOH I:358 , HOH I:362 , HOH I:363 , HOH I:385 , HOH I:389 , HOH I:396 , GLN J:16 , ILE J:17 , TYR J:18 , ASN J:44 , GLY J:45 , ALA J:46 , ILE J:47 , PHE J:48 , THR J:92 , PRO J:93 , HIS J:94 , HOH J:302 , HOH J:303 , HOH J:304 , HOH J:305 , HOH J:306 , HOH J:309 , HOH J:312 , HOH J:329 , HOH J:372 , HOH J:376 , HOH J:377 , HOH J:379 , HOH J:396 , HOH J:403
binding site for Poly-Saccharide residues GLC J 201 through FUC J 205
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