PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5EJZ
Asym. Unit
Info
Asym.Unit (477 KB)
Biol.Unit 1 (466 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
BACTERIAL CELLULOSE SYNTHASE PRODUCT-BOUND STATE
Authors
:
J. L. W. Morgan, J. Zimmer
Date
:
02 Nov 15 (Deposition) - 09 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (1x)
Keywords
:
Cellulose Synthase, Translocation, Biopolymer, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Morgan, J. T. Mcnamara, M. Fischer, J. Rich, H. M. Chen, S. G. Withers, J. Zimmer
Observing Cellulose Biosynthesis And Membrane Translocation In Crystallo.
Nature V. 531 329 2016
[
close entry info
]
Hetero Components
(9, 37)
Info
All Hetero Components
1a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEa)
2a: BETA-D-GLUCOSE (BGCa)
2b: BETA-D-GLUCOSE (BGCb)
2c: BETA-D-GLUCOSE (BGCc)
2d: BETA-D-GLUCOSE (BGCd)
2e: BETA-D-GLUCOSE (BGCe)
2f: BETA-D-GLUCOSE (BGCf)
2g: BETA-D-GLUCOSE (BGCg)
2h: BETA-D-GLUCOSE (BGCh)
2i: BETA-D-GLUCOSE (BGCi)
2j: BETA-D-GLUCOSE (BGCj)
2k: BETA-D-GLUCOSE (BGCk)
2l: BETA-D-GLUCOSE (BGCl)
2m: BETA-D-GLUCOSE (BGCm)
2n: BETA-D-GLUCOSE (BGCn)
2o: BETA-D-GLUCOSE (BGCo)
2p: BETA-D-GLUCOSE (BGCp)
2q: BETA-D-GLUCOSE (BGCq)
3a: 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10A... (C2Ea)
3b: 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10A... (C2Eb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCa)
5b: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCb)
5c: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCc)
6a: 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRAN... (SHGa)
7a: URIDINE-5'-DIPHOSPHATE (UDPa)
8a: UNDECANE (UNDa)
9a: (UNKa)
9b: (UNKb)
9c: (UNKc)
9d: (UNKd)
9e: (UNKe)
9f: (UNKf)
9g: (UNKg)
9h: (UNKh)
9i: (UNKi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PE
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2
BGC
17
Ligand/Ion
BETA-D-GLUCOSE
3
C2E
2
Ligand/Ion
9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
PLC
3
Ligand/Ion
DIUNDECYL PHOSPHATIDYL CHOLINE
6
SHG
1
Ligand/Ion
2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSE
7
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
8
UND
1
Ligand/Ion
UNDECANE
9
UNK
9
Mod. Amino Acid
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:579 , ARG A:580 , ALA A:581 , ARG A:584 , ASP A:609 , SER A:613 , GLY A:614 , VAL A:615 , ARG A:616 , ARG A:658 , GLY A:670 , VAL A:671 , ILE A:672 , C2E A:920
binding site for residue C2E A 919
02
AC2
SOFTWARE
GLN A:578 , ARG A:579 , ARG A:580 , ARG A:584 , ARG A:616 , ARG A:658 , SER A:659 , C2E A:919
binding site for residue C2E A 920
03
AC3
SOFTWARE
PRO A:147 , SER A:148 , TYR A:149 , GLU A:151 , ASP A:180 , ALA A:225 , LYS A:226 , ASN A:229 , ASP A:246 , ALA A:247 , GLN A:379 , ARG A:382 , PHE A:503 , VAL A:505 , THR A:506 , LYS A:508 , SHG A:918 , MG A:922
binding site for residue UDP A 921
04
AC4
SOFTWARE
HIS A:249 , SHG A:918 , UDP A:921
binding site for residue MG A 922
05
AC5
SOFTWARE
LEU A:434 , PHE A:435 , PHE A:436 , ARG A:541 , ASP A:548 , BGC A:906
binding site for residue PLC A 923
06
AC6
SOFTWARE
ALA A:54 , LYS A:57 , LEU A:709 , LEU A:710
binding site for residue 3PE A 924
07
AC7
SOFTWARE
GLY B:231 , LEU B:234 , GLU B:237 , ALA B:487 , ALA B:488
binding site for residue MG B 801
08
AC8
SOFTWARE
GLN B:575 , PLC B:803
binding site for residue UND B 802
09
AC9
SOFTWARE
UND B:802
binding site for residue PLC B 803
10
AD1
SOFTWARE
SER A:48 , PRO B:695
binding site for residue PLC B 804
11
AD2
SOFTWARE
TYR A:80 , GLU A:108 , SER A:111 , PHE A:115 , ASN A:118 , LYS A:226 , ASP A:246 , GLU A:297 , MET A:300 , PHE A:301 , TYR A:302 , ILE A:305 , CYS A:318 , THR A:341 , GLU A:342 , ASP A:343 , TRP A:383 , MET A:387 , ASN A:412 , SER A:413 , PHE A:416 , TRP A:417 , ARG A:423 , PHE A:426 , ALA A:429 , PRO A:430 , TYR A:433 , GLY A:437 , ILE A:438 , GLU A:439 , PHE A:441 , ALA A:443 , MET A:452 , TYR A:455 , SER A:459 , GLU A:477 , GLU A:480 , GLY A:547 , ASP A:548 , VAL A:551 , VAL A:554 , VAL A:555 , TRP A:558 , UDP A:921 , MG A:922 , PLC A:923 , ARG B:384 , MET B:385 , PRO B:387 , ARG B:390 , LEU B:399 , SER B:568
binding site for Poly-Saccharide residues BGC A 901 through SHG A 918
12
AD3
SOFTWARE
TYR A:80 , GLU A:108 , SER A:111 , PHE A:115 , ASN A:118 , TYR A:168 , ARG A:171 , LEU A:172 , ARG A:173 , LYS A:226 , ASP A:246 , GLU A:297 , MET A:300 , PHE A:301 , TYR A:302 , ILE A:305 , CYS A:318 , THR A:341 , GLU A:342 , ASP A:343 , TRP A:383 , MET A:387 , ASN A:412 , SER A:413 , PHE A:416 , TRP A:417 , ARG A:423 , PHE A:426 , ALA A:429 , PRO A:430 , TYR A:433 , GLY A:437 , ILE A:438 , GLU A:439 , PHE A:441 , ALA A:443 , MET A:452 , TYR A:455 , SER A:459 , GLU A:477 , GLU A:480 , GLY A:547 , ASP A:548 , VAL A:551 , VAL A:554 , VAL A:555 , TRP A:558 , BGC A:901 , UDP A:921 , MG A:922 , PLC A:923 , ARG B:384 , MET B:385 , PRO B:387 , ARG B:390 , LEU B:399 , SER B:568
binding site for residues UNK D 169 and UNK D 170
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (477 KB)
Header - Asym.Unit
Biol.Unit 1 (466 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5EJZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help