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5EF2
Biol. Unit 2
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Asym.Unit (288 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (155 KB)
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(1)
Title
:
RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 21.9 MGY
Authors
:
C. S. Bury, J. E. Mcgeehan, E. F. Garman, M. B. Shevtsov
Date
:
23 Oct 15 (Deposition) - 04 May 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K (1x)
Biol. Unit 2: L,M,N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Protein-Rna Complex, Radiation Damage, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Bury, J. E. Mcgeehan, A. A. Antson, I. Carmichael, M. Gerstel, M. B. Shevtsov, E. F. Garman
Rna Protects A Nucleoprotein Complex Against Radiation Damage.
Acta Crystallogr D Struct V. 72 648 2016 Biol
(for further references see the
PDB file header
)
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: TRYPTOPHAN (TRPa)
1b: TRYPTOPHAN (TRPb)
1c: TRYPTOPHAN (TRPc)
1d: TRYPTOPHAN (TRPd)
1e: TRYPTOPHAN (TRPe)
1f: TRYPTOPHAN (TRPf)
1g: TRYPTOPHAN (TRPg)
1h: TRYPTOPHAN (TRPh)
1i: TRYPTOPHAN (TRPi)
1j: TRYPTOPHAN (TRPj)
1k: TRYPTOPHAN (TRPk)
1l: TRYPTOPHAN (TRPl)
1m: TRYPTOPHAN (TRPm)
1n: TRYPTOPHAN (TRPn)
1o: TRYPTOPHAN (TRPo)
1p: TRYPTOPHAN (TRPp)
1q: TRYPTOPHAN (TRPq)
1r: TRYPTOPHAN (TRPr)
1s: TRYPTOPHAN (TRPs)
1t: TRYPTOPHAN (TRPt)
1u: TRYPTOPHAN (TRPu)
1v: TRYPTOPHAN (TRPv)
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No.
Name
Count
Type
Full Name
1
TRP
11
Ligand/Ion
TRYPTOPHAN
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Sites
(11, 11)
Info
All Sites
01: AD3 (SOFTWARE)
02: AD4 (SOFTWARE)
03: AD5 (SOFTWARE)
04: AD6 (SOFTWARE)
05: AD7 (SOFTWARE)
06: AD8 (SOFTWARE)
07: AD9 (SOFTWARE)
08: AE1 (SOFTWARE)
09: AE2 (SOFTWARE)
10: AE3 (SOFTWARE)
11: AE4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AD3
SOFTWARE
THR L:25 , ARG L:26 , GLY L:27 , ASP L:29 , THR L:30 , SER L:53 , GLY V:23 , GLN V:47 , THR V:49 , THR V:52
binding site for residue TRP L 101
02
AD4
SOFTWARE
GLY L:23 , HIS L:33 , GLN L:47 , THR L:49 , THR L:52 , HOH L:211 , THR M:25 , ARG M:26 , GLY M:27 , ASP M:29 , THR M:30 , SER M:53
binding site for residue TRP M 101
03
AD5
SOFTWARE
GLY M:23 , GLN M:47 , THR M:49 , THR M:52 , HOH M:221 , THR N:25 , ARG N:26 , GLY N:27 , ASP N:29 , THR N:30 , SER N:53
binding site for residue TRP N 101
04
AD6
SOFTWARE
GLY N:23 , GLN N:47 , THR N:49 , THR N:52 , HOH N:215 , THR O:25 , ARG O:26 , GLY O:27 , ASP O:29 , THR O:30 , SER O:53
binding site for residue TRP O 101
05
AD7
SOFTWARE
GLY O:23 , GLN O:47 , THR O:49 , THR O:52 , HOH O:219 , THR P:25 , ARG P:26 , GLY P:27 , ASP P:29 , THR P:30 , SER P:53
binding site for residue TRP P 101
06
AD8
SOFTWARE
GLY P:23 , GLN P:47 , THR P:49 , THR P:52 , HOH P:220 , THR Q:25 , ARG Q:26 , GLY Q:27 , ASP Q:29 , THR Q:30 , SER Q:53
binding site for residue TRP Q 101
07
AD9
SOFTWARE
GLY Q:23 , GLN Q:47 , THR Q:49 , THR Q:52 , HOH Q:222 , THR R:25 , ARG R:26 , GLY R:27 , ASP R:29 , THR R:30 , SER R:53
binding site for residue TRP R 101
08
AE1
SOFTWARE
GLY R:23 , GLN R:47 , THR R:49 , THR R:52 , HOH R:213 , THR S:25 , ARG S:26 , GLY S:27 , ASP S:29 , THR S:30 , SER S:53
binding site for residue TRP S 101
09
AE2
SOFTWARE
GLY S:23 , ALA S:46 , GLN S:47 , THR S:49 , THR S:52 , HOH S:205 , THR T:25 , ARG T:26 , GLY T:27 , ASP T:29 , THR T:30 , SER T:53
binding site for residue TRP T 101
10
AE3
SOFTWARE
GLY T:23 , GLN T:47 , THR T:49 , THR T:52 , HOH T:217 , THR U:25 , ARG U:26 , GLY U:27 , ASP U:29 , THR U:30 , SER U:53
binding site for residue TRP U 101
11
AE4
SOFTWARE
GLY U:23 , GLN U:47 , THR U:49 , THR U:52 , THR V:25 , GLY V:27 , ASP V:29 , THR V:30 , SER V:53 , HOH V:217
binding site for residue TRP V 101
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Asymmetric Unit 1
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Asym.Unit (288 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (155 KB)
Header - Biol.Unit 2
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