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5EEH
Biol. Unit 2
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Asym.Unit (374 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (243 KB)
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Title
:
CRYSTAL STRUCTURE OF CARMINOMYCIN-4-O-METHYLTRANSFERASE DNRK IN COMPLEX WITH SAH AND 2-CHLORO-4-NITROPHENOL
Authors
:
F. Wang, S. Singh, J. S. Thorson, G. N. Phillips Jr. , Enzyme Discovery Natural Product Biosynthesis (Natpro)
Date
:
22 Oct 15 (Deposition) - 16 Dec 15 (Release) - 28 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Unnatural Substrate, Structural Genomics, Psi-Biology, Protein Structure Initiative, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. D. Huber, F. Wang, S. Singh, B. R. Johnson, J. Zhang, M. Sunkara, S. G. Van Lanen, A. J. Morris, G. N. Phillips, J. S. Thorson
Functional Adomet Isosteres Resistant To Classical Adomet Degradation Pathways.
Acs Chem. Biol. V. 11 2484 2016
[
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: 2-CHLORANYL-4-NITRO-PHENOL (P9Pa)
1b: 2-CHLORANYL-4-NITRO-PHENOL (P9Pb)
1c: 2-CHLORANYL-4-NITRO-PHENOL (P9Pc)
1d: 2-CHLORANYL-4-NITRO-PHENOL (P9Pd)
1e: 2-CHLORANYL-4-NITRO-PHENOL (P9Pe)
1f: 2-CHLORANYL-4-NITRO-PHENOL (P9Pf)
1g: 2-CHLORANYL-4-NITRO-PHENOL (P9Pg)
1h: 2-CHLORANYL-4-NITRO-PHENOL (P9Ph)
1i: 2-CHLORANYL-4-NITRO-PHENOL (P9Pi)
1j: 2-CHLORANYL-4-NITRO-PHENOL (P9Pj)
1k: 2-CHLORANYL-4-NITRO-PHENOL (P9Pk)
1l: 2-CHLORANYL-4-NITRO-PHENOL (P9Pl)
1m: 2-CHLORANYL-4-NITRO-PHENOL (P9Pm)
1n: 2-CHLORANYL-4-NITRO-PHENOL (P9Pn)
1o: 2-CHLORANYL-4-NITRO-PHENOL (P9Po)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
P9P
6
Ligand/Ion
2-CHLORANYL-4-NITRO-PHENOL
2
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AD1 (SOFTWARE)
05: AD3 (SOFTWARE)
06: AD4 (SOFTWARE)
07: AD5 (SOFTWARE)
08: AD6 (SOFTWARE)
09: AD7 (SOFTWARE)
10: AD8 (SOFTWARE)
11: AD9 (SOFTWARE)
12: AE1 (SOFTWARE)
13: AE2 (SOFTWARE)
14: AE3 (SOFTWARE)
15: AE4 (SOFTWARE)
16: AE5 (SOFTWARE)
17: AE6 (SOFTWARE)
18: AE7 (SOFTWARE)
19: AE8 (SOFTWARE)
20: AE9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ILE A:21 , ALA A:101 , GLN A:103 , ASP A:163 , THR A:339 , ILE A:340 , P9P A:403 , P9P A:406 , SO4 A:409 , P9P B:401
binding site for residue P9P A 405
02
AC7
SOFTWARE
ALA A:173 , ARG A:200 , HOH A:625 , LEU B:94 , HIS B:99 , P9P B:406
binding site for residue P9P A 407
03
AC8
SOFTWARE
ARG A:61 , ARG A:131 , HIS A:261 , HOH A:516 , HOH A:606 , HOH A:612 , HOH A:687 , HOH A:697 , ARG B:128
binding site for residue SO4 A 408
04
AD1
SOFTWARE
ARG A:115 , ARG A:149 , HOH A:502 , HOH A:521 , ARG B:265
binding site for residue SO4 A 410
05
AD3
SOFTWARE
GLN A:13 , ILE A:14 , LEU A:17 , HIS A:99 , P9P A:405 , ARG B:200 , HOH B:638
binding site for residue P9P B 401
06
AD4
SOFTWARE
TYR B:143 , ARG B:153 , LEU B:160 , GLY B:187 , GLU B:210 , MET B:211 , GLY B:236 , ASP B:237 , PHE B:238 , SER B:252 , PHE B:253 , ASN B:257 , TRP B:258 , P9P B:405 , HOH B:513 , HOH B:596 , HOH B:607 , HOH B:613 , HOH B:634 , HOH B:643 , HOH B:650
binding site for residue SAH B 402
07
AD5
SOFTWARE
TRP B:106 , VAL B:113 , PHE B:142 , PHE B:156 , LEU B:160 , ASN B:257 , ARG B:303 , MET B:304 , PHE B:307 , LEU B:308 , P9P B:404 , P9P B:405 , HOH B:504 , HOH B:602
binding site for residue P9P B 403
08
AD6
SOFTWARE
TRP B:106 , ASP B:163 , TYR B:342 , P9P B:403 , P9P B:405 , P9P B:406 , P9P B:407 , HOH B:587 , HOH B:608
binding site for residue P9P B 404
09
AD7
SOFTWARE
LEU B:160 , ALA B:167 , PHE B:253 , LEU B:300 , SAH B:402 , P9P B:403 , P9P B:404
binding site for residue P9P B 405
10
AD8
SOFTWARE
P9P A:407 , ALA B:101 , GLN B:103 , ASP B:163 , THR B:339 , ILE B:340 , P9P B:404 , P9P B:407 , SO4 B:409
binding site for residue P9P B 406
11
AD9
SOFTWARE
GLU B:295 , GLU B:299 , ILE B:340 , P9P B:404 , P9P B:406 , SO4 B:409 , HOH B:510 , HOH B:608
binding site for residue P9P B 407
12
AE1
SOFTWARE
ARG B:131 , PRO B:259 , HIS B:261 , HOH B:509 , HOH B:522 , HOH B:597 , HOH B:656 , HOH B:672
binding site for residue SO4 B 408
13
AE2
SOFTWARE
GLN B:103 , TRP B:106 , ARG B:303 , P9P B:406 , P9P B:407 , HOH B:519 , HOH B:683
binding site for residue SO4 B 409
14
AE3
SOFTWARE
ARG B:115 , ARG B:149
binding site for residue SO4 B 410
15
AE4
SOFTWARE
ARG B:61 , PRO B:62 , GLU B:63
binding site for residue SO4 B 411
16
AE5
SOFTWARE
TYR C:143 , ARG C:153 , LEU C:160 , PHE C:168 , GLY C:187 , GLY C:189 , GLU C:210 , MET C:211 , GLY C:236 , ASP C:237 , PHE C:238 , SER C:252 , PHE C:253 , ASN C:257 , P9P C:403 , HOH C:594 , HOH C:614
binding site for residue SAH C 401
17
AE6
SOFTWARE
TRP C:106 , VAL C:113 , PHE C:142 , PHE C:156 , ASN C:257 , ARG C:303 , MET C:304 , PHE C:307 , LEU C:308 , P9P C:403 , P9P C:404 , HOH C:502 , HOH C:616
binding site for residue P9P C 402
18
AE7
SOFTWARE
LEU C:160 , PHE C:168 , PHE C:253 , LEU C:300 , SAH C:401 , P9P C:402 , P9P C:404 , HOH C:646
binding site for residue P9P C 403
19
AE8
SOFTWARE
TYR C:342 , P9P C:402 , P9P C:403 , HOH C:616 , HOH C:646
binding site for residue P9P C 404
20
AE9
SOFTWARE
ARG C:115 , ARG C:149
binding site for residue SO4 C 405
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (374 KB)
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Header - Biol.Unit 1
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