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5EAR
Biol. Unit 2
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Asym.Unit (113 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN WDR5 IN COMPLEX WITH COMPOUND 9D
Authors
:
A. Dong, L. Dombrovski, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomi Consortium (Sgc)
Date
:
16 Oct 15 (Deposition) - 04 Nov 15 (Release) - 24 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Wdr5, Compound 9D, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription - Transcription Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dombrovski, A. Dong, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Wdr5 In Complex With Compound 9D
To Be Published
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close entry info
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: N-[5-(2,3-DIHYDRO-1-BENZOFURAN-7-Y... (5MQa)
1b: N-[5-(2,3-DIHYDRO-1-BENZOFURAN-7-Y... (5MQb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
3a: SULFATE ION (SO4a)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
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Label:
No.
Name
Count
Type
Full Name
1
5MQ
1
Ligand/Ion
N-[5-(2,3-DIHYDRO-1-BENZOFURAN-7-YL)-2-(4-METHYLPIPERAZIN-1-YL)PHENYL]-3-METHYLBENZAMIDE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
1
Ligand/Ion
SULFATE ION
4
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(13, 13)
Info
All Sites
01: AC8 (SOFTWARE)
02: AD2 (SOFTWARE)
03: AD3 (SOFTWARE)
04: AD4 (SOFTWARE)
05: AD5 (SOFTWARE)
06: AD6 (SOFTWARE)
07: AD7 (SOFTWARE)
08: AD8 (SOFTWARE)
09: AD9 (SOFTWARE)
10: AE1 (SOFTWARE)
11: AE2 (SOFTWARE)
12: AE3 (SOFTWARE)
13: AE4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
ASP A:98 , ASN A:100 , HOH A:590 , LYS B:38
binding site for residue EDO A 408
02
AD2
SOFTWARE
SER B:49 , SER B:50 , ALA B:65 , ILE B:90 , SER B:91 , PHE B:133 , SER B:175 , TYR B:191 , CYS B:261 , ILE B:305 , EDO B:410 , HOH B:511 , HOH B:583 , HOH B:666
binding site for residue 5MQ B 401
03
AD3
SOFTWARE
LYS B:123 , THR B:124 , HOH B:501 , HOH B:516 , HOH B:647
binding site for residue SO4 B 402
04
AD4
SOFTWARE
TYR B:228 , LEU B:240 , LYS B:250 , GLN B:289 , HOH B:519
binding site for residue EDO B 403
05
AD5
SOFTWARE
SER A:129 , TYR B:260 , ASP B:302 , GLU B:322 , HOH B:669 , HOH B:721
binding site for residue EDO B 404
06
AD6
SOFTWARE
THR B:40 , LEU B:206 , GLY B:299 , THR B:301 , ASP B:324 , THR B:326 , LYS B:328 , HOH B:555 , HOH B:571 , HOH B:682
binding site for residue EDO B 405
07
AD7
SOFTWARE
ALA B:42 , GLY B:43 , LYS B:70 , PHE B:79 , SER B:202 , HOH B:586
binding site for residue EDO B 406
08
AD8
SOFTWARE
PHE B:39 , ALA B:74 , TYR B:75 , HOH B:547
binding site for residue EDO B 407
09
AD9
SOFTWARE
SER B:223 , PRO B:224 , ASN B:225 , TYR B:228 , HOH B:519 , HOH B:534 , HOH B:695
binding site for residue EDO B 408
10
AE1
SOFTWARE
PHE B:79 , LYS B:81 , THR B:82 , HOH B:707
binding site for residue EDO B 409
11
AE2
SOFTWARE
ASP B:107 , PHE B:133 , 5MQ B:401
binding site for residue EDO B 410
12
AE3
SOFTWARE
LYS B:123 , VAL B:158 , LYS B:159
binding site for residue EDO B 411
13
AE4
SOFTWARE
LEU B:143 , ILE B:155 , LYS B:165 , THR B:200 , ALA B:201
binding site for residue EDO B 412
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
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