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5EA9
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH NEQ0130
Authors
:
J. R. Rocha, D. K. Inaoka, J. Cheleski, T. Shiba, S. Harada, C. A. Montana
Date
:
15 Oct 15 (Deposition) - 19 Oct 16 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
T. Cruzi, Dihydroorotate Dehydrogenase, Covalent Inhibitor, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Rocha, J. Cheleski, D. K. Inaoka, L. A. Avelar, J. F. R. Ribeiro, H. J. Wiggers, S. Albuquerque, T. Shiba, S. Harada, K. Kita, A. B. F. Silva, C. A. Montanari
Exploring Trypanosoma Cruzi Dihydroorotate Dehydrogenase Active Site Plasticity For The Discovery Of Potent And Selective Inhibitors With Trypanocidal Activity
To Be Published
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: 5-[(E)-3-THIOPHEN-2-YLPROP-2-ENYLI... (5LMa)
1b: 5-[(E)-3-THIOPHEN-2-YLPROP-2-ENYLI... (5LMb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
5a: COBALT HEXAMMINE(III) (NCOa)
5b: COBALT HEXAMMINE(III) (NCOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5LM
2
Ligand/Ion
5-[(E)-3-THIOPHEN-2-YLPROP-2-ENYLIDENE]-1,3-DIAZINANE-2,4,6-TRIONE
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
GOL
13
Ligand/Ion
GLYCEROL
5
NCO
2
Ligand/Ion
COBALT HEXAMMINE(III)
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:44 , CYS A:45 , ASN A:67 , MET A:69 , GLY A:70 , LEU A:71 , PRO A:72 , ASN A:73 , SER A:99 , ASN A:127 , CYS A:130 , ASN A:132 , ASN A:194 , SER A:195 , FMN A:409 , HOH A:569
binding site for residue 5LM A 401
02
AC2
SOFTWARE
ILE A:171 , ARG A:239 , HOH A:599 , HOH A:671 , LYS B:214 , GLN B:215 , PHE B:217 , HOH B:509 , HOH B:608
binding site for residue GOL A 402
03
AC3
SOFTWARE
PHE A:61 , ASP A:203 , HOH A:562 , HOH A:612 , HOH A:669
binding site for residue GOL A 403
04
AC4
SOFTWARE
GOL A:408 , HOH A:524 , HOH A:543
binding site for residue GOL A 404
05
AC5
SOFTWARE
ASP A:175 , THR A:176 , HOH A:645 , LEU B:80 , ARG B:112 , HOH B:573 , HOH B:612
binding site for residue GOL A 405
06
AC6
SOFTWARE
LEU A:4 , ASN A:5 , GLU A:302 , ARG A:305 , HOH A:552 , HOH A:574 , HOH A:666 , LYS B:3 , ASN B:5
binding site for residue GOL A 406
07
AC7
SOFTWARE
TYR A:237 , PRO A:241
binding site for residue GOL A 407
08
AC8
SOFTWARE
LEU A:22 , ASP A:28 , GOL A:404 , HOH A:502 , HOH A:503 , HOH A:511 , HOH A:537 , HOH A:704
binding site for residue GOL A 408
09
AC9
SOFTWARE
ALA A:18 , ALA A:19 , GLY A:20 , LYS A:43 , SER A:44 , ASN A:67 , ASN A:127 , LYS A:164 , VAL A:193 , ASN A:194 , SER A:195 , GLY A:221 , GLY A:222 , ILE A:225 , CYS A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , 5LM A:401 , HOH A:522 , HOH A:548 , HOH A:553 , HOH A:564
binding site for residue FMN A 409
10
AD1
SOFTWARE
LEU A:63 , LYS A:223 , HOH A:520 , HOH A:531 , HOH A:593 , LEU B:63
binding site for residue EDO A 410
11
AD2
SOFTWARE
LEU A:74 , GLY A:75 , ASP A:77 , PHE A:78 , HOH A:518
binding site for residue EDO A 411
12
AD3
SOFTWARE
TYR A:252 , ALA A:273 , GLU A:276 , GLU A:277 , ARG A:284 , HOH A:514 , HOH A:521 , HOH A:561
binding site for residue EDO A 412
13
AD4
SOFTWARE
VAL A:10 , PRO A:93 , HOH A:506 , HOH A:525 , ARG B:299 , THR B:300
binding site for residue EDO A 413
14
AD5
SOFTWARE
GLY A:278 , PRO A:279 , HOH A:643 , GLY B:278 , PRO B:279 , NCO B:409 , HOH B:656
binding site for residue EDO A 414
15
AD6
SOFTWARE
LYS A:214 , GLN A:215 , PHE A:217 , ILE B:171 , ARG B:238 , ARG B:239 , HOH B:543 , HOH B:620 , HOH B:699
binding site for residue GOL B 402
16
AD7
SOFTWARE
HIS A:173 , TYR B:141 , TYR B:168 , PHE B:169 , HIS B:173 , HOH B:502 , HOH B:505
binding site for residue GOL B 403
17
AD8
SOFTWARE
ARG A:112 , THR B:176 , HOH B:542
binding site for residue GOL B 404
18
AD9
SOFTWARE
ILE A:171 , ALA A:172 , HOH A:576 , PRO B:115 , GLY B:135 , PRO B:137 , EDO B:413 , HOH B:506 , HOH B:522 , HOH B:529
binding site for residue GOL B 405
19
AE1
SOFTWARE
TYR B:58 , HOH B:508 , HOH B:515
binding site for residue GOL B 406
20
AE2
SOFTWARE
CYS A:31 , ALA A:34 , SER A:35 , CYS B:31 , ALA B:34 , SER B:35 , HOH B:615 , HOH B:638
binding site for residue GOL B 407
21
AE3
SOFTWARE
ALA B:18 , ALA B:19 , GLY B:20 , LYS B:43 , SER B:44 , ASN B:67 , ASN B:127 , LYS B:164 , VAL B:193 , ASN B:194 , GLY B:221 , GLY B:222 , ILE B:225 , CYS B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , 5LM B:401 , HOH B:526 , HOH B:537 , HOH B:553 , HOH B:618
binding site for residue FMN B 408
22
AE4
SOFTWARE
GLN A:275 , GLU A:276 , GLY A:278 , EDO A:414 , GLN B:275 , GLU B:276 , GLY B:278 , HOH B:689 , HOH B:692
binding site for residue NCO B 409
23
AE5
SOFTWARE
ASP A:203 , ASP B:203
binding site for residue NCO B 410
24
AE6
SOFTWARE
HOH A:531 , LEU B:63 , LYS B:223 , HOH B:636 , HOH B:747
binding site for residue EDO B 411
25
AE7
SOFTWARE
ALA B:273 , GLU B:276 , GLU B:277 , ARG B:284 , HOH B:524 , HOH B:533 , HOH B:575
binding site for residue EDO B 412
26
AE8
SOFTWARE
ARG B:111 , ALA B:114 , PRO B:115 , ALA B:156 , GOL B:405 , HOH B:517
binding site for residue EDO B 413
27
AE9
SOFTWARE
PHE B:61 , HOH B:511 , HOH B:605 , HOH B:635
binding site for residue EDO B 414
28
AF1
SOFTWARE
THR B:25 , LEU B:74 , HOH B:504 , HOH B:528 , HOH B:550 , HOH B:591 , HOH B:599
binding site for residue EDO B 415
29
AF2
SOFTWARE
ARG B:30 , THR B:33 , TYR B:82 , HIS B:87 , ASP B:88 , HOH B:597
binding site for residue EDO B 416
30
AF3
SOFTWARE
SER B:44 , CYS B:45 , THR B:46 , ASN B:67 , MET B:69 , GLY B:70 , LEU B:71 , PRO B:72 , ASN B:73 , SER B:99 , ASN B:127 , SER B:129 , PRO B:131 , ASN B:132 , GLN B:138 , ASN B:194 , SER B:195 , FMN B:408 , HOH B:551 , HOH B:559 , HOH B:627
binding site for Di-peptide 5LM B 401 and CYS B 130
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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