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5E7O
Biol. Unit 3
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (228 KB)
Biol.Unit 2 (227 KB)
Biol.Unit 3 (227 KB)
Biol.Unit 4 (226 KB)
Biol.Unit 5 (224 KB)
Biol.Unit 6 (225 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB MUTANT W461E OF PCRA FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, J. A. Tainer
Date
:
12 Oct 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Oxidoreductase Mo-Bismgd Fe-S Cluster Perchlorate Dissmilation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(6, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
2c: FE3-S4 CLUSTER (F3Sc)
2d: FE3-S4 CLUSTER (F3Sd)
2e: FE3-S4 CLUSTER (F3Se)
2f: FE3-S4 CLUSTER (F3Sf)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
4b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
4c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
4d: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1d)
4e: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1e)
4f: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1f)
5a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
5b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
5c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
5d: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDd)
5e: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDe)
5f: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDf)
6a: MOLYBDENUM ATOM (MOa)
6b: MOLYBDENUM ATOM (MOb)
6c: MOLYBDENUM ATOM (MOc)
6d: MOLYBDENUM ATOM (MOd)
6e: MOLYBDENUM ATOM (MOe)
6f: MOLYBDENUM ATOM (MOf)
7a: IRON/SULFUR CLUSTER (SF4a)
7b: IRON/SULFUR CLUSTER (SF4b)
7c: IRON/SULFUR CLUSTER (SF4c)
7d: IRON/SULFUR CLUSTER (SF4d)
7e: IRON/SULFUR CLUSTER (SF4e)
7f: IRON/SULFUR CLUSTER (SF4f)
7g: IRON/SULFUR CLUSTER (SF4g)
7h: IRON/SULFUR CLUSTER (SF4h)
7i: IRON/SULFUR CLUSTER (SF4i)
7j: IRON/SULFUR CLUSTER (SF4j)
7k: IRON/SULFUR CLUSTER (SF4k)
7l: IRON/SULFUR CLUSTER (SF4l)
7m: IRON/SULFUR CLUSTER (SF4m)
7n: IRON/SULFUR CLUSTER (SF4n)
7o: IRON/SULFUR CLUSTER (SF4o)
7p: IRON/SULFUR CLUSTER (SF4p)
7q: IRON/SULFUR CLUSTER (SF4q)
7r: IRON/SULFUR CLUSTER (SF4r)
7s: IRON/SULFUR CLUSTER (SF4s)
7t: IRON/SULFUR CLUSTER (SF4t)
7u: IRON/SULFUR CLUSTER (SF4u)
7v: IRON/SULFUR CLUSTER (SF4v)
7w: IRON/SULFUR CLUSTER (SF4w)
7x: IRON/SULFUR CLUSTER (SF4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
GOL
1
Ligand/Ion
GLYCEROL
4
MD1
1
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
5
MGD
1
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
6
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
7
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AD1 (SOFTWARE)
02: AF2 (SOFTWARE)
03: AF3 (SOFTWARE)
04: AF4 (SOFTWARE)
05: AF5 (SOFTWARE)
06: AF6 (SOFTWARE)
07: AF7 (SOFTWARE)
08: AF8 (SOFTWARE)
09: AF9 (SOFTWARE)
10: AG1 (SOFTWARE)
11: AG2 (SOFTWARE)
12: AG3 (SOFTWARE)
13: AG4 (SOFTWARE)
14: AG5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD1
SOFTWARE
GLU A:495 , ASN A:553 , HOH A:1210 , TRP E:806 , ARG F:103
binding site for residue EDO A 1010
02
AF2
SOFTWARE
HIS E:32 , CYS E:36 , ALA E:39 , CYS E:40 , GLY E:73 , CYS E:74 , GLY E:77
binding site for residue SF4 E 1001
03
AF3
SOFTWARE
ASP E:170 , MGD E:1003 , MD1 E:1004
binding site for residue MO E 1002
04
AF4
SOFTWARE
LYS E:76 , ASP E:170 , GLY E:201 , ASN E:203 , GLN E:206 , THR E:207 , ARG E:208 , ILE E:228 , SER E:229 , PRO E:230 , ASP E:231 , ASN E:233 , GLY E:248 , ASP E:250 , GLY E:421 , GLY E:422 , GLY E:423 , TRP E:427 , ILE E:458 , GLY E:459 , ASN E:761 , PRO E:763 , HIS E:764 , SER E:765 , ARG E:766 , SER E:768 , VAL E:769 , HIS E:770 , ARG E:830 , ARG E:882 , MO E:1002 , MD1 E:1004 , HOH E:1130 , HOH E:1329 , HOH E:1336
binding site for residue MGD E 1003
05
AF5
SOFTWARE
LEU E:33 , ASN E:35 , PRO E:138 , TYR E:168 , ASP E:170 , ARG E:537 , GLY E:538 , ASN E:539 , GLN E:543 , LYS E:545 , ILE E:564 , ASN E:565 , ILE E:566 , ARG E:567 , ASP E:569 , SER E:581 , TRP E:584 , LYS E:587 , ASP E:615 , SER E:762 , HIS E:764 , VAL E:769 , HIS E:770 , SER E:771 , THR E:772 , HIS E:835 , GLN E:849 , GLN E:881 , ARG E:882 , MO E:1002 , MGD E:1003 , HOH E:1220 , HOH E:1353
binding site for residue MD1 E 1004
06
AF6
SOFTWARE
LYS E:462 , THR E:593 , SER E:594 , HIS E:596 , ASN E:697 , TYR E:708
binding site for residue EDO E 1005
07
AF7
SOFTWARE
LYS E:273 , PRO E:317 , LYS E:318 , ILE E:347 , PRO E:354 , ARG E:727
binding site for residue GOL E 1006
08
AF8
SOFTWARE
PHE E:9 , SER E:12 , GLU E:15 , HOH E:1146 , HOH E:1388 , TYR F:155 , GLN F:159
binding site for residue EDO E 1007
09
AF9
SOFTWARE
LYS E:241 , GLU F:268 , GLY F:272 , PRO F:274 , HOH F:533
binding site for residue EDO F 401
10
AG1
SOFTWARE
CYS F:149 , PRO F:150 , ASN F:151 , CYS F:170 , LYS F:171 , GLY F:172 , ALA F:173 , GLN F:174 , ALA F:175 , CYS F:176 , ALA F:194
binding site for residue F3S F 402
11
AG2
SOFTWARE
CYS F:137 , ASN F:138 , CYS F:140 , PRO F:143 , CYS F:145 , CYS F:180
binding site for residue SF4 F 403
12
AG3
SOFTWARE
CYS F:21 , ILE F:22 , CYS F:24 , CYS F:27 , CYS F:216 , GLY F:218
binding site for residue SF4 F 404
13
AG4
SOFTWARE
CYS F:31 , ARG F:47 , MET F:136 , CYS F:197 , GLY F:199 , CYS F:200 , CYS F:212
binding site for residue SF4 F 405
14
AG5
SOFTWARE
GLY F:85 , ILE F:86 , THR F:109 , PRO F:110 , ARG F:111 , SER F:112 , HOH F:503
binding site for residue EDO F 406
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.2 MB)
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Biol.Unit 1 (228 KB)
Header - Biol.Unit 1
Biol.Unit 2 (227 KB)
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Biol.Unit 3 (227 KB)
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Biol.Unit 4 (226 KB)
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Biol.Unit 5 (224 KB)
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