PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5E24
Asym. Unit
Info
Asym.Unit (623 KB)
Biol.Unit 1 (297 KB)
Biol.Unit 2 (320 KB)
Biol.Unit 3 (608 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE SU(H)-HAIRLESS-DNA REPRESSOR COMPLEX
Authors
:
R. A. Kovall, Z. Yuan
Date
:
30 Sep 15 (Deposition) - 15 Jun 16 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,F (1x)
Biol. Unit 2: C,D,E,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Notch Signaling, Suppressor Of Hairless, Hairless, Csl, Transport-Dna Binding-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yuan, H. Praxenthaler, N. Tabaja, R. Torella, A. Preiss, D. Maier, R. A. Kovall
Structure And Function Of The Su(H)-Hairless Repressor Complex, The Major Antagonist Of Notch Signaling In Drosophila Melanogaster.
Plos Biol. V. 14 02509 2016
[
close entry info
]
Hetero Components
(2, 115)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1au: 1,2-ETHANEDIOL (EDOau)
1av: 1,2-ETHANEDIOL (EDOav)
1aw: 1,2-ETHANEDIOL (EDOaw)
1ax: 1,2-ETHANEDIOL (EDOax)
1ay: 1,2-ETHANEDIOL (EDOay)
1az: 1,2-ETHANEDIOL (EDOaz)
1b: 1,2-ETHANEDIOL (EDOb)
1ba: 1,2-ETHANEDIOL (EDOba)
1bb: 1,2-ETHANEDIOL (EDObb)
1bc: 1,2-ETHANEDIOL (EDObc)
1bd: 1,2-ETHANEDIOL (EDObd)
1be: 1,2-ETHANEDIOL (EDObe)
1bf: 1,2-ETHANEDIOL (EDObf)
1bg: 1,2-ETHANEDIOL (EDObg)
1bh: 1,2-ETHANEDIOL (EDObh)
1bi: 1,2-ETHANEDIOL (EDObi)
1bj: 1,2-ETHANEDIOL (EDObj)
1bk: 1,2-ETHANEDIOL (EDObk)
1bl: 1,2-ETHANEDIOL (EDObl)
1bm: 1,2-ETHANEDIOL (EDObm)
1bn: 1,2-ETHANEDIOL (EDObn)
1bo: 1,2-ETHANEDIOL (EDObo)
1bp: 1,2-ETHANEDIOL (EDObp)
1bq: 1,2-ETHANEDIOL (EDObq)
1br: 1,2-ETHANEDIOL (EDObr)
1bs: 1,2-ETHANEDIOL (EDObs)
1bt: 1,2-ETHANEDIOL (EDObt)
1bu: 1,2-ETHANEDIOL (EDObu)
1bv: 1,2-ETHANEDIOL (EDObv)
1bw: 1,2-ETHANEDIOL (EDObw)
1bx: 1,2-ETHANEDIOL (EDObx)
1by: 1,2-ETHANEDIOL (EDOby)
1bz: 1,2-ETHANEDIOL (EDObz)
1c: 1,2-ETHANEDIOL (EDOc)
1ca: 1,2-ETHANEDIOL (EDOca)
1cb: 1,2-ETHANEDIOL (EDOcb)
1cc: 1,2-ETHANEDIOL (EDOcc)
1cd: 1,2-ETHANEDIOL (EDOcd)
1ce: 1,2-ETHANEDIOL (EDOce)
1cf: 1,2-ETHANEDIOL (EDOcf)
1cg: 1,2-ETHANEDIOL (EDOcg)
1ch: 1,2-ETHANEDIOL (EDOch)
1ci: 1,2-ETHANEDIOL (EDOci)
1cj: 1,2-ETHANEDIOL (EDOcj)
1ck: 1,2-ETHANEDIOL (EDOck)
1cl: 1,2-ETHANEDIOL (EDOcl)
1cm: 1,2-ETHANEDIOL (EDOcm)
1cn: 1,2-ETHANEDIOL (EDOcn)
1co: 1,2-ETHANEDIOL (EDOco)
1cp: 1,2-ETHANEDIOL (EDOcp)
1cq: 1,2-ETHANEDIOL (EDOcq)
1cr: 1,2-ETHANEDIOL (EDOcr)
1cs: 1,2-ETHANEDIOL (EDOcs)
1ct: 1,2-ETHANEDIOL (EDOct)
1cu: 1,2-ETHANEDIOL (EDOcu)
1cv: 1,2-ETHANEDIOL (EDOcv)
1cw: 1,2-ETHANEDIOL (EDOcw)
1cx: 1,2-ETHANEDIOL (EDOcx)
1cy: 1,2-ETHANEDIOL (EDOcy)
1cz: 1,2-ETHANEDIOL (EDOcz)
1d: 1,2-ETHANEDIOL (EDOd)
1da: 1,2-ETHANEDIOL (EDOda)
1db: 1,2-ETHANEDIOL (EDOdb)
1dc: 1,2-ETHANEDIOL (EDOdc)
1dd: 1,2-ETHANEDIOL (EDOdd)
1de: 1,2-ETHANEDIOL (EDOde)
1df: 1,2-ETHANEDIOL (EDOdf)
1dg: 1,2-ETHANEDIOL (EDOdg)
1dh: 1,2-ETHANEDIOL (EDOdh)
1di: 1,2-ETHANEDIOL (EDOdi)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: MALTOTETRAOSE (MTTa)
2b: MALTOTETRAOSE (MTTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
113
Ligand/Ion
1,2-ETHANEDIOL
2
MTT
2
Ligand/Ion
MALTOTETRAOSE
[
close Hetero Component info
]
Sites
(115, 115)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: AD1 (SOFTWARE)
011: AD2 (SOFTWARE)
012: AD3 (SOFTWARE)
013: AD4 (SOFTWARE)
014: AD5 (SOFTWARE)
015: AD6 (SOFTWARE)
016: AD7 (SOFTWARE)
017: AD8 (SOFTWARE)
018: AD9 (SOFTWARE)
019: AE1 (SOFTWARE)
020: AE2 (SOFTWARE)
021: AE3 (SOFTWARE)
022: AE4 (SOFTWARE)
023: AE5 (SOFTWARE)
024: AE6 (SOFTWARE)
025: AE7 (SOFTWARE)
026: AE8 (SOFTWARE)
027: AE9 (SOFTWARE)
028: AF1 (SOFTWARE)
029: AF2 (SOFTWARE)
030: AF3 (SOFTWARE)
031: AF4 (SOFTWARE)
032: AF5 (SOFTWARE)
033: AF6 (SOFTWARE)
034: AF7 (SOFTWARE)
035: AF8 (SOFTWARE)
036: AF9 (SOFTWARE)
037: AG1 (SOFTWARE)
038: AG2 (SOFTWARE)
039: AG3 (SOFTWARE)
040: AG4 (SOFTWARE)
041: AG5 (SOFTWARE)
042: AG6 (SOFTWARE)
043: AG7 (SOFTWARE)
044: AG8 (SOFTWARE)
045: AG9 (SOFTWARE)
046: AH1 (SOFTWARE)
047: AH2 (SOFTWARE)
048: AH3 (SOFTWARE)
049: AH4 (SOFTWARE)
050: AH5 (SOFTWARE)
051: AH6 (SOFTWARE)
052: AH7 (SOFTWARE)
053: AH8 (SOFTWARE)
054: AH9 (SOFTWARE)
055: AI1 (SOFTWARE)
056: AI2 (SOFTWARE)
057: AI3 (SOFTWARE)
058: AI4 (SOFTWARE)
059: AI5 (SOFTWARE)
060: AI6 (SOFTWARE)
061: AI7 (SOFTWARE)
062: AI8 (SOFTWARE)
063: AI9 (SOFTWARE)
064: AJ1 (SOFTWARE)
065: AJ2 (SOFTWARE)
066: AJ3 (SOFTWARE)
067: AJ4 (SOFTWARE)
068: AJ5 (SOFTWARE)
069: AJ6 (SOFTWARE)
070: AJ7 (SOFTWARE)
071: AJ8 (SOFTWARE)
072: AJ9 (SOFTWARE)
073: AK1 (SOFTWARE)
074: AK2 (SOFTWARE)
075: AK3 (SOFTWARE)
076: AK4 (SOFTWARE)
077: AK5 (SOFTWARE)
078: AK6 (SOFTWARE)
079: AK7 (SOFTWARE)
080: AK8 (SOFTWARE)
081: AK9 (SOFTWARE)
082: AL1 (SOFTWARE)
083: AL2 (SOFTWARE)
084: AL3 (SOFTWARE)
085: AL4 (SOFTWARE)
086: AL5 (SOFTWARE)
087: AL6 (SOFTWARE)
088: AL7 (SOFTWARE)
089: AL8 (SOFTWARE)
090: AL9 (SOFTWARE)
091: AM1 (SOFTWARE)
092: AM2 (SOFTWARE)
093: AM3 (SOFTWARE)
094: AM4 (SOFTWARE)
095: AM5 (SOFTWARE)
096: AM6 (SOFTWARE)
097: AM7 (SOFTWARE)
098: AM8 (SOFTWARE)
099: AM9 (SOFTWARE)
100: AN1 (SOFTWARE)
101: AN2 (SOFTWARE)
102: AN3 (SOFTWARE)
103: AN4 (SOFTWARE)
104: AN5 (SOFTWARE)
105: AN6 (SOFTWARE)
106: AN7 (SOFTWARE)
107: AN8 (SOFTWARE)
108: AN9 (SOFTWARE)
109: AO1 (SOFTWARE)
110: AO2 (SOFTWARE)
111: AO3 (SOFTWARE)
112: AO4 (SOFTWARE)
113: AO5 (SOFTWARE)
114: AO6 (SOFTWARE)
115: AO7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
GLU A:22 , LYS A:26 , GLU A:288 , EDO A:413 , HOH A:550 , HOH A:641
binding site for residue EDO A 401
002
AC2
SOFTWARE
ASP A:287 , GLU A:288 , GLU A:291 , TYR A:307 , GLU A:310
binding site for residue EDO A 402
003
AC3
SOFTWARE
TRP A:158 , LYS A:256 , PRO A:257 , PHE A:258 , GLY A:327 , GLU A:328 , HOH A:551 , HOH A:644
binding site for residue EDO A 403
004
AC4
SOFTWARE
TYR A:176 , MET A:330 , PRO A:331 , ASN A:332 , EDO A:434 , HOH A:549
binding site for residue EDO A 404
005
AC5
SOFTWARE
TRP A:62 , GLU A:153 , MTT A:449 , HOH A:653
binding site for residue EDO A 405
006
AC6
SOFTWARE
GLN A:86 , ASP A:87 , EDO A:409 , ASN F:136 , GLU F:137 , LYS F:138
binding site for residue EDO A 406
007
AC7
SOFTWARE
GLU A:22 , LYS A:295 , ASP A:296 , HOH A:533 , HOH A:665
binding site for residue EDO A 407
008
AC8
SOFTWARE
TYR A:17 , ASN A:18 , ASP A:296 , LYS A:297
binding site for residue EDO A 408
009
AC9
SOFTWARE
GLN A:86 , ARG A:98 , EDO A:406 , HOH A:680 , GLU F:137
binding site for residue EDO A 409
010
AD1
SOFTWARE
GLU A:45 , LYS A:46 , GLN A:49
binding site for residue EDO A 410
011
AD2
SOFTWARE
ASP A:180 , VAL A:181 , GLN A:365
binding site for residue EDO A 411
012
AD3
SOFTWARE
GLN A:325 , GLN F:270 , THR F:271 , VAL F:272 , ARG F:275 , GLN F:376
binding site for residue EDO A 412
013
AD4
SOFTWARE
LYS A:26 , GLU A:288 , EDO A:401
binding site for residue EDO A 413
014
AD5
SOFTWARE
PRO A:40 , ASP A:41 , LYS A:46 , EDO A:435
binding site for residue EDO A 414
015
AD6
SOFTWARE
LYS A:140 , LEU A:147 , MET A:148 , LYS A:202 , HIS A:203 , HOH A:529 , HOH A:545
binding site for residue EDO A 415
016
AD7
SOFTWARE
ALA A:77 , GLU A:78 , LYS A:273 , LYS A:277 , EDO A:417
binding site for residue EDO A 416
017
AD8
SOFTWARE
ALA A:77 , GLU A:78 , EDO A:416 , HOH A:607
binding site for residue EDO A 417
018
AD9
SOFTWARE
ASP A:41 , LYS A:42 , LYS A:46
binding site for residue EDO A 418
019
AE1
SOFTWARE
ARG A:98 , ASN A:100 , GLY A:101 , EDO A:434
binding site for residue EDO A 419
020
AE2
SOFTWARE
LEU A:121 , GLU A:138 , LEU A:139 , LYS A:142 , HOH A:562
binding site for residue EDO A 420
021
AE3
SOFTWARE
ASP A:164 , ASN A:185 , ALA A:186 , GLY A:187 , HOH A:540
binding site for residue EDO A 421
022
AE4
SOFTWARE
ARG A:344 , MTT A:449
binding site for residue EDO A 422
023
AE5
SOFTWARE
TYR A:242 , ARG A:316 , EDO A:436
binding site for residue EDO A 423
024
AE6
SOFTWARE
GLU A:28 , LYS A:29 , GLY A:32 , ARG E:234
binding site for residue EDO A 424
025
AE7
SOFTWARE
LYS A:144 , ASN A:218 , LYS A:219 , GLY A:220 , ALA A:239 , VAL A:240
binding site for residue EDO A 425
026
AE8
SOFTWARE
ASN A:294 , LYS A:295 , PRO A:298 , ARG A:316 , EDO A:444 , HOH A:535
binding site for residue EDO A 426
027
AE9
SOFTWARE
VAL A:196 , ASP A:197 , VAL A:357 , HOH A:554 , HOH A:598 , HOH A:613
binding site for residue EDO A 427
028
AF1
SOFTWARE
TYR A:17 , ASN A:18 , ALA A:21 , VAL A:37 , HOH A:591 , HOH A:642
binding site for residue EDO A 428
029
AF2
SOFTWARE
PRO A:48 , ARG A:66 , GLY A:69 , TYR A:70 , SER A:73 , HOH A:572 , GLU F:481
binding site for residue EDO A 429
030
AF3
SOFTWARE
PHE A:85 , GLU A:281 , LEU A:285 , LEU A:304 , HOH A:508 , HOH A:522 , SER E:182
binding site for residue EDO A 430
031
AF4
SOFTWARE
GLU A:130 , EDO A:445 , HOH A:570 , HOH A:621 , GLY C:5 , ILE C:33
binding site for residue EDO A 431
032
AF5
SOFTWARE
TYR A:167 , ASN A:185 , HOH A:648
binding site for residue EDO A 432
033
AF6
SOFTWARE
GLN A:49 , VAL A:50 , THR A:53 , ARG F:107 , GLU F:464
binding site for residue EDO A 433
034
AF7
SOFTWARE
ARG A:98 , TYR A:99 , ASN A:332 , EDO A:404 , EDO A:419 , HOH A:513 , HOH A:616
binding site for residue EDO A 434
035
AF8
SOFTWARE
GLU A:38 , HIS A:39 , PRO A:40 , EDO A:414
binding site for residue EDO A 435
036
AF9
SOFTWARE
VAL A:244 , PRO A:315 , ARG A:316 , EDO A:423 , EDO A:446
binding site for residue EDO A 436
037
AG1
SOFTWARE
LYS A:277 , EDO A:448 , HOH A:587 , ASP E:183 , SER E:207
binding site for residue EDO A 437
038
AG2
SOFTWARE
SER A:270 , PRO A:271 , ASN A:272 , LYS A:273 , GLU A:274 , HOH A:502
binding site for residue EDO A 438
039
AG3
SOFTWARE
ALA A:83
binding site for residue EDO A 439
040
AG4
SOFTWARE
ALA A:268 , ALA A:269 , SER A:270 , LYS A:273
binding site for residue EDO A 440
041
AG5
SOFTWARE
ALA A:71 , GLU A:78 , LYS A:102 , HOH A:582
binding site for residue EDO A 441
042
AG6
SOFTWARE
ALA A:215 , LYS A:219 , HOH A:608 , LYS C:137 , GLU C:138
binding site for residue EDO A 442
043
AG7
SOFTWARE
LYS A:200 , ALA A:350 , ALA A:351 , GLY A:353 , HOH A:712
binding site for residue EDO A 443
044
AG8
SOFTWARE
ASN A:294 , LYS A:295 , TYR A:307 , EDO A:426 , HOH A:519
binding site for residue EDO A 444
045
AG9
SOFTWARE
GLU A:130 , GLU A:131 , EDO A:431 , GLU C:4
binding site for residue EDO A 445
046
AH1
SOFTWARE
VAL A:244 , THR A:245 , VAL A:246 , GLU A:322 , EDO A:436 , HOH A:541
binding site for residue EDO A 446
047
AH2
SOFTWARE
LYS A:200 , ASN A:201 , LYS A:202 , HOH A:723
binding site for residue EDO A 447
048
AH3
SOFTWARE
GLU A:274 , GLU A:278 , EDO A:437 , HOH A:666 , LYS E:209 , ARG E:210
binding site for residue EDO A 448
049
AH4
SOFTWARE
ASP A:14 , LYS A:15 , LYS A:42 , GLU A:44 , GLU A:45 , TRP A:62 , ALA A:63 , ASP A:65 , ARG A:66 , GLU A:111 , GLU A:153 , PRO A:154 , TYR A:155 , PHE A:156 , TRP A:230 , TRP A:340 , TYR A:341 , ARG A:344 , EDO A:405 , EDO A:422 , HOH A:504 , HOH A:510 , HOH A:580 , HOH A:584 , HOH A:674 , HOH A:689 , HOH A:699
binding site for residue MTT A 449
050
AH5
SOFTWARE
LYS C:15 , TYR C:17 , ASN C:18 , ASP C:296 , LYS C:297 , HOH C:519
binding site for residue EDO C 401
051
AH6
SOFTWARE
SER C:211 , ILE C:212 , ALA C:215 , HOH C:513
binding site for residue EDO C 402
052
AH7
SOFTWARE
LYS C:15 , GLY C:16 , TRP C:230 , VAL C:293 , LYS C:297 , PRO C:298 , LEU C:299
binding site for residue EDO C 403
053
AH8
SOFTWARE
GLU C:45 , LYS C:46 , GLN C:49 , ARG E:107 , GLU E:111
binding site for residue EDO C 404
054
AH9
SOFTWARE
LEU C:121 , LEU C:122 , GLU C:138 , LYS C:142
binding site for residue EDO C 405
055
AI1
SOFTWARE
PRO C:271 , ASN C:272 , LYS C:273 , GLU C:274 , LEU C:275
binding site for residue EDO C 406
056
AI2
SOFTWARE
MET C:330 , PRO C:331 , ASN C:332
binding site for residue EDO C 407
057
AI3
SOFTWARE
GLU C:308 , ALA C:312 , ILE C:317
binding site for residue EDO C 408
058
AI4
SOFTWARE
LYS A:251 , THR C:31 , ILE C:33 , LEU C:275 , GLU C:278
binding site for residue EDO C 409
059
AI5
SOFTWARE
GLU C:130 , GLU C:131 , PRO C:133 , ALA C:134
binding site for residue EDO C 410
060
AI6
SOFTWARE
THR C:128 , GLU C:130
binding site for residue EDO C 411
061
AI7
SOFTWARE
ASP C:14 , TYR C:210 , GLU C:214 , ASN C:234
binding site for residue EDO C 412
062
AI8
SOFTWARE
TRP C:62 , GLU C:153 , MTT C:415
binding site for residue EDO C 413
063
AI9
SOFTWARE
GLN C:355 , THR C:356 , GLU C:359
binding site for residue EDO C 414
064
AJ1
SOFTWARE
ASP C:14 , LYS C:15 , LYS C:42 , GLU C:44 , GLU C:45 , TRP C:62 , ALA C:63 , ASP C:65 , ARG C:66 , GLU C:111 , GLU C:153 , PRO C:154 , TYR C:155 , PHE C:156 , TRP C:230 , TRP C:340 , TYR C:341 , ARG C:344 , EDO C:413 , HOH C:501 , HOH C:528 , HOH C:534 , HOH C:546 , HOH C:556 , HOH C:576 , HOH C:581
binding site for residue MTT C 415
065
AJ2
SOFTWARE
PHE D:243 , ILE D:244 , VAL D:261 , THR D:262 , GLU F:307
binding site for residue EDO D 301
066
AJ3
SOFTWARE
LYS D:239 , ASP D:240
binding site for residue EDO D 302
067
AJ4
SOFTWARE
GLU E:488 , VAL E:492 , PRO E:495 , THR E:496 , THR E:517 , TYR E:518 , HOH E:710
binding site for residue EDO E 601
068
AJ5
SOFTWARE
LEU E:173 , GLY E:193 , LYS E:194 , EDO E:610 , HOH E:840
binding site for residue EDO E 602
069
AJ6
SOFTWARE
GLU E:411
binding site for residue EDO E 603
070
AJ7
SOFTWARE
VAL E:123 , PHE E:150 , LYS E:409 , HOH E:772
binding site for residue EDO E 604
071
AJ8
SOFTWARE
LYS E:233 , ALA E:410 , GLU E:411 , HOH E:739
binding site for residue EDO E 605
072
AJ9
SOFTWARE
GLN E:484 , PHE E:485 , GLU E:488
binding site for residue EDO E 606
073
AK1
SOFTWARE
THR E:106 , ARG E:107 , ASP E:108
binding site for residue EDO E 607
074
AK2
SOFTWARE
TRP E:489 , LEU E:490 , THR E:519 , PRO E:520 , HOH E:710 , HOH E:837
binding site for residue EDO E 608
075
AK3
SOFTWARE
MET E:114 , ARG E:117 , PRO E:499
binding site for residue EDO E 609
076
AK4
SOFTWARE
LEU E:149 , GLY E:151 , THR E:155 , GLN E:195 , EDO E:602 , HOH E:765
binding site for residue EDO E 610
077
AK5
SOFTWARE
CYS E:174 , PHE E:176 , PHE E:220 , EDO E:613
binding site for residue EDO E 611
078
AK6
SOFTWARE
PRO E:334 , ARG E:335 , MET E:364 , LYS E:365 , GLN E:381 , HOH E:767
binding site for residue EDO E 612
079
AK7
SOFTWARE
PHE E:176 , LYS E:218 , EDO E:611
binding site for residue EDO E 613
080
AK8
SOFTWARE
ASP E:252 , CYS E:254 , GLN E:356 , SER E:406 , HOH E:753
binding site for residue EDO E 614
081
AK9
SOFTWARE
ALA E:256 , SER E:257 , ASP E:313 , GLY E:314 , TYR E:315
binding site for residue EDO E 615
082
AL1
SOFTWARE
VAL E:229 , PRO E:424 , THR E:426 , PRO E:427 , HOH E:734
binding site for residue EDO E 616
083
AL2
SOFTWARE
LEU E:125 , TYR E:148 , HIS E:278 , GLN E:290 , TRP E:291 , GLY E:292 , ALA E:293 , HOH E:841
binding site for residue EDO E 617
084
AL3
SOFTWARE
GLN E:131 , PHE E:140 , ARG E:266 , HOH E:706 , HOH E:717 , HOH E:782 , HOH H:101
binding site for residue EDO E 618
085
AL4
SOFTWARE
SER E:306 , GLU E:307
binding site for residue EDO E 619
086
AL5
SOFTWARE
PHE E:264 , ASN E:265 , ARG E:266 , CYS E:401 , TRP E:402 , THR E:403 , EDO E:624
binding site for residue EDO E 620
087
AL6
SOFTWARE
GLU E:411 , GLN E:413 , ALA E:511 , THR E:512 , GLY E:513 , HOH E:785
binding site for residue EDO E 621
088
AL7
SOFTWARE
ASN E:136 , LYS E:138 , SER E:205
binding site for residue EDO E 622
089
AL8
SOFTWARE
CYS E:146 , TYR E:148 , TYR E:196 , THR E:289 , GLN E:290 , TRP E:291
binding site for residue EDO E 623
090
AL9
SOFTWARE
LYS E:359 , ASP E:398 , CYS E:401 , EDO E:620
binding site for residue EDO E 624
091
AM1
SOFTWARE
PHE F:176 , MET F:186 , PHE F:220
binding site for residue EDO F 601
092
AM2
SOFTWARE
GLU F:488 , VAL F:492 , PRO F:495 , THR F:496 , THR F:517 , TYR F:518 , HOH F:751
binding site for residue EDO F 602
093
AM3
SOFTWARE
LYS F:409 , GLU F:411
binding site for residue EDO F 603
094
AM4
SOFTWARE
LEU F:149 , TRP F:154 , THR F:155 , GLN F:195 , EDO F:621 , HOH F:727
binding site for residue EDO F 604
095
AM5
SOFTWARE
ASN F:192 , GLY F:193 , HOH F:721
binding site for residue EDO F 605
096
AM6
SOFTWARE
PRO F:495 , THR F:519 , HOH F:745
binding site for residue EDO F 606
097
AM7
SOFTWARE
VAL F:229 , ASN F:231 , TYR F:412 , THR F:426 , PRO F:427 , VAL F:428
binding site for residue EDO F 607
098
AM8
SOFTWARE
GLU F:488 , LEU F:490 , VAL F:492 , HOH F:712 , HOH F:751
binding site for residue EDO F 608
099
AM9
SOFTWARE
LYS F:104 , HIS F:455 , GLN F:457 , TRP F:459 , GLU F:464 , VAL F:503 , ARG F:504 , ASN F:505 , HOH F:716
binding site for residue EDO F 609
100
AN1
SOFTWARE
HIS F:126 , ALA F:127 , VAL F:129 , ALA F:130 , PHE F:141 , PRO F:143 , PRO F:145
binding site for residue EDO F 610
101
AN2
SOFTWARE
TYR F:113 , PRO F:499 , ILE F:500 , SER F:501 , ALA F:511 , THR F:512 , GLY F:513 , LEU F:514
binding site for residue EDO F 611
102
AN3
SOFTWARE
GLN F:484 , PHE F:485 , GLU F:488
binding site for residue EDO F 612
103
AN4
SOFTWARE
GLY E:165 , LEU F:162 , GLY F:165 , GLU F:166 , GLY F:167
binding site for residue EDO F 613
104
AN5
SOFTWARE
LYS F:233 , ALA F:410 , GLU F:411 , TYR F:412
binding site for residue EDO F 614
105
AN6
SOFTWARE
PRO F:427 , ASN F:451 , PHE F:452 , THR F:453 , THR F:472 , EDO F:616
binding site for residue EDO F 615
106
AN7
SOFTWARE
PRO F:427 , ASN F:451 , THR F:453 , ARG F:504 , TYR F:510 , EDO F:615
binding site for residue EDO F 616
107
AN8
SOFTWARE
ARG F:266 , LEU F:267 , ARG F:268 , GLN F:270 , ASP F:398
binding site for residue EDO F 617
108
AN9
SOFTWARE
ARG F:275 , SER F:287 , SER F:288 , THR F:289 , GLU F:377 , HOH F:755
binding site for residue EDO F 618
109
AO1
SOFTWARE
ARG A:354 , TRP F:491 , ARG F:493
binding site for residue EDO F 619
110
AO2
SOFTWARE
ARG E:493 , GLN E:494 , ARG F:493
binding site for residue EDO F 620
111
AO3
SOFTWARE
PHE F:150 , GLY F:151 , SER F:152 , EDO F:604
binding site for residue EDO F 621
112
AO4
SOFTWARE
TYR F:196 , CYS F:197 , ALA F:198
binding site for residue EDO F 622
113
AO5
SOFTWARE
MET F:120 , ARG F:157 , TYR F:221 , GLU F:416
binding site for residue EDO F 623
114
AO6
SOFTWARE
ARG B:249 , TRP B:258 , VAL F:479 , PRO F:480 , GLU F:481 , ILE F:482 , SER F:483 , HOH F:723
binding site for residue EDO F 624
115
AO7
SOFTWARE
LYS F:233 , LYS F:409 , GLU F:411
binding site for residue EDO F 625
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (623 KB)
Header - Asym.Unit
Biol.Unit 1 (297 KB)
Header - Biol.Unit 1
Biol.Unit 2 (320 KB)
Header - Biol.Unit 2
Biol.Unit 3 (608 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5E24
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help