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5DYY
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (184 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH N-((1-BENZYLPIPERIDIN-3-YL)METHYL)NAPHTHALENE-2-SULFONAMIDE
Authors
:
N. Coquelle, B. Brus, J. P. Colletier
Date
:
25 Sep 15 (Deposition) - 18 Jan 17 (Release) - 18 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Human Butyrylcholinesterase Ad Alzheimer Disease Sulfonamide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Kosak, B. Brus, D. Knez, R. Sink, S. Zakelj, J. Trontelj, A. Pislar, J. Slenc, M. Gobec, M. Zivin, L. Tratnjek, M. Perse, K. Saat, A. Podkowa B. Filipek, F. Nachon, X. Brazzolotto, A. Wieckowska, B. Malawska, J. Stojan, I. M. Rascan, J. Kos, N. Coquelle, J. P. Colletier, S. Gobec
Development Of An In-Vivo Active Reversible Butyrylcholinesterase Inhibitor.
Sci Rep V. 6 39495 2016
[
close entry info
]
Hetero Components
(8, 37)
Info
All Hetero Components
1a: N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]ME... (5HHa)
1b: N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]ME... (5HHb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: S-HYDROXYCYSTEINE (CSOa)
3b: S-HYDROXYCYSTEINE (CSOb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
5a: ALPHA-L-FUCOSE (FUCa)
6a: BETA-L-FUCOSE (FULa)
6b: BETA-L-FUCOSE (FULb)
6c: BETA-L-FUCOSE (FULc)
7a: GLYCEROL (GOLa)
7b: GLYCEROL (GOLb)
7c: GLYCEROL (GOLc)
7d: GLYCEROL (GOLd)
7e: GLYCEROL (GOLe)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8i: N-ACETYL-D-GLUCOSAMINE (NAGi)
8j: N-ACETYL-D-GLUCOSAMINE (NAGj)
8k: N-ACETYL-D-GLUCOSAMINE (NAGk)
8l: N-ACETYL-D-GLUCOSAMINE (NAGl)
8m: N-ACETYL-D-GLUCOSAMINE (NAGm)
8n: N-ACETYL-D-GLUCOSAMINE (NAGn)
8o: N-ACETYL-D-GLUCOSAMINE (NAGo)
8p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8q: N-ACETYL-D-GLUCOSAMINE (NAGq)
8r: N-ACETYL-D-GLUCOSAMINE (NAGr)
8s: N-ACETYL-D-GLUCOSAMINE (NAGs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5HH
2
Ligand/Ion
N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]METHYL}NAPHTHALENE-2-SULFONAMIDE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
6
FUL
3
Ligand/Ion
BETA-L-FUCOSE
7
GOL
5
Ligand/Ion
GLYCEROL
8
NAG
19
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:18 , TYR A:61 , TRP A:98 , ASP A:129 , LYS A:131
binding site for residue GOL A 601
02
AC2
SOFTWARE
ASN A:228 , TYR A:396 , CYS A:400 , PRO A:401 , THR A:523
binding site for residue GOL A 602
03
AC3
SOFTWARE
TYR A:33 , SER A:48 , LEU A:49 , LEU A:173 , TRP A:177
binding site for residue GOL A 603
04
AC4
SOFTWARE
HIS A:77 , GLU A:443
binding site for residue EDO A 604
05
AC5
SOFTWARE
GLY A:116 , GLY A:117 , GLN A:119 , THR A:120 , SER A:198 , SER A:287 , TYR A:332 , TRP A:430 , HIS A:438 , HOH A:705
binding site for residue 5HH A 605
06
AC6
SOFTWARE
GLU A:197
binding site for residue CL A 606
07
AC7
SOFTWARE
LEU B:18 , TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131
binding site for residue GOL B 601
08
AC8
SOFTWARE
HIS B:77 , MET B:81 , SER B:425 , LYS B:427 , LEU B:428 , GLU B:443
binding site for residue GOL B 602
09
AC9
SOFTWARE
ARG B:42 , LYS B:267 , PRO B:269
binding site for residue EDO B 603
10
AD1
SOFTWARE
PRO B:230 , TRP B:231 , VAL B:233 , THR B:234 , GLU B:238 , VAL B:288
binding site for residue EDO B 604
11
AD2
SOFTWARE
GLY B:116 , GLY B:117 , THR B:120 , SER B:198 , TRP B:231 , LEU B:286 , SER B:287 , PHE B:329 , TYR B:332 , TRP B:430 , HIS B:438 , TYR B:440 , HOH B:788
binding site for residue 5HH B 605
12
AD3
SOFTWARE
GLU B:197
binding site for residue CL B 606
13
AD4
SOFTWARE
ASN A:17 , THR A:24
binding site for Mono-Saccharide NAG A 607 bound to ASN A 17
14
AD5
SOFTWARE
ILE A:55 , ASN A:57
binding site for Poly-Saccharide residues NAG A 608 through FUC A 609 bound to ASN A 57
15
AD6
SOFTWARE
LYS A:105 , ASN A:106 , ASN A:188 , LYS A:190
binding site for Poly-Saccharide residues NAG A 610 through NAG A 611 bound to ASN A 106
16
AD7
SOFTWARE
ASN A:241 , ASN A:245 , LYS A:248 , PHE A:278 , NAG B:615
binding site for Poly-Saccharide residues NAG A 612 through FUL A 613 bound to ASN A 241
17
AD8
SOFTWARE
SER A:338 , ASN A:341 , HOH A:703 , HOH A:786 , HOH A:800
binding site for Mono-Saccharide NAG A 614 bound to ASN A 341
18
AD9
SOFTWARE
ASN A:481 , GLU A:482 , THR A:483 , GLN A:484 , CSO B:66 , ASP B:87 , LEU B:88 , GLN B:270
binding site for Poly-Saccharide residues NAG A 615 through NAG A 616 bound to ASN A 481
19
AE1
SOFTWARE
ASN A:486 , SER A:487 , THR A:488 , THR A:508
binding site for Poly-Saccharide residues NAG A 617 through FUL A 619 bound to ASN A 486
20
AE2
SOFTWARE
ASN B:17
binding site for Mono-Saccharide NAG B 607 bound to ASN B 17
21
AE3
SOFTWARE
ILE B:55 , ASN B:57
binding site for Mono-Saccharide NAG B 608 bound to ASN B 57
22
AE4
SOFTWARE
ASN B:106 , ASN B:188 , HOH B:707
binding site for Mono-Saccharide NAG B 609 bound to ASN B 106
23
AE5
SOFTWARE
TYR B:237 , ASN B:241 , ASN B:245 , PHE B:278 , TYR B:282 , HOH B:768
binding site for Poly-Saccharide residues NAG B 610 through FUL B 612 bound to ASN B 241
24
AE6
SOFTWARE
ASN B:256
binding site for Mono-Saccharide NAG B 613 bound to ASN B 256
25
AE7
SOFTWARE
SER B:338 , ASN B:341 , HOH B:702 , HOH B:722 , HOH B:733
binding site for Mono-Saccharide NAG B 614 bound to ASN B 341
26
AE8
SOFTWARE
TYR A:237 , NAG A:612 , ASP B:454 , ASN B:455
binding site for Mono-Saccharide NAG B 615 bound to ASN B 455
27
AE9
SOFTWARE
TYR B:477 , ASN B:481 , GLU B:482 , HOH B:783
binding site for Mono-Saccharide NAG B 616 bound to ASN B 481
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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(0, 0)
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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