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5DYW
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (187 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH N-((1-BENZYLPIPERIDIN-3-YL)METHYL)-N-(2-METHOXYETHYL)NAPHTHALENE-2-SULFONAMIDE
Authors
:
N. Coquelle, B. Brus, J. P. Colletier
Date
:
25 Sep 15 (Deposition) - 18 Jan 17 (Release) - 18 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Human Butyrylcholinesterase Ad Alzheimer Disease Sulfonamide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Kosak, B. Brus, D. Knez, R. Sink, S. Zakelj, J. Trontelj, A. Pislar, J. Slenc, M. Gobec, M. Zivin, L. Tratnjek, M. Perse, K. Saat, A. Podkowa B. Filipek, F. Nachon, X. Brazzolotto, A. Wieckowska, B. Malawska, J. Stojan, I. M. Rascan, J. Kos, N. Coquelle, J. P. Colletier, S. Gobec
Development Of An In-Vivo Active Reversible Butyrylcholinesterase Inhibitor.
Sci Rep V. 6 39495 2016
[
close entry info
]
Hetero Components
(8, 55)
Info
All Hetero Components
1a: N-{[(3S)-1-BENZYLPIPERIDIN-3-YL]ME... (5HFa)
1b: N-{[(3S)-1-BENZYLPIPERIDIN-3-YL]ME... (5HFb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
5a: BETA-L-FUCOSE (FULa)
5b: BETA-L-FUCOSE (FULb)
5c: BETA-L-FUCOSE (FULc)
5d: BETA-L-FUCOSE (FULd)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
7v: N-ACETYL-D-GLUCOSAMINE (NAGv)
7w: N-ACETYL-D-GLUCOSAMINE (NAGw)
7x: N-ACETYL-D-GLUCOSAMINE (NAGx)
8a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5HF
2
Ligand/Ion
N-{[(3S)-1-BENZYLPIPERIDIN-3-YL]METHYL}-N-(2-METHOXYETHYL)NAPHTHALENE-2-SULFONAMIDE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
4
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
5
FUL
4
Ligand/Ion
BETA-L-FUCOSE
6
GOL
9
Ligand/Ion
GLYCEROL
7
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:68 , GLY A:116 , GLY A:117 , GLN A:119 , THR A:120 , SER A:198 , TRP A:231 , SER A:287 , PHE A:398 , TRP A:430 , MET A:437 , HIS A:438
binding site for residue 5HF A 601
02
AC2
SOFTWARE
LEU A:18 , TYR A:61 , TRP A:98 , ASP A:129 , LYS A:131
binding site for residue GOL A 602
03
AC3
SOFTWARE
PRO A:189 , LYS A:190 , SER A:215 , PHE A:217 , THR A:218 , LYS A:313
binding site for residue GOL A 603
04
AC4
SOFTWARE
TYR A:396 , CYS A:400 , PRO A:401 , TRP A:522 , THR A:523
binding site for residue GOL A 604
05
AC5
SOFTWARE
TYR A:33 , SER A:48 , LEU A:49 , TRP A:177 , LYS A:180
binding site for residue GOL A 605
06
AC6
SOFTWARE
ASN A:479 , TRP A:490 , HOH A:759 , GLN B:71
binding site for residue EDO A 606
07
AC7
SOFTWARE
THR A:108 , ASN A:188
binding site for residue EDO A 607
08
AC8
SOFTWARE
HIS A:77 , LYS A:427 , GLU A:443
binding site for residue EDO A 608
09
AC9
SOFTWARE
LYS A:494 , SER A:495 , THR A:496
binding site for residue EDO A 609
10
AD1
SOFTWARE
ARG A:386 , GLU A:387 , TRP A:433
binding site for residue EDO A 610
11
AD2
SOFTWARE
LEU A:29 , GLY A:30 , TRP A:56 , ASN A:57 , LYS A:60 , ALA A:62 , TYR A:94 , HOH A:777
binding site for residue EDO A 611
12
AD3
SOFTWARE
ARG A:386
binding site for residue CL A 612
13
AD4
SOFTWARE
GLU A:197
binding site for residue CL A 613
14
AD5
SOFTWARE
SER A:426 , ASN A:455 , TYR A:456 , NAG A:616
binding site for residue PG4 A 614
15
AD6
SOFTWARE
ASN B:68 , ILE B:69 , ASP B:70 , TRP B:82 , GLY B:116 , GLY B:117 , GLN B:119 , THR B:120 , SER B:198 , SER B:287 , ALA B:328 , PHE B:329 , PHE B:398 , TRP B:430 , MET B:437 , HIS B:438
binding site for residue 5HF B 601
16
AD7
SOFTWARE
LEU B:18 , TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131
binding site for residue GOL B 602
17
AD8
SOFTWARE
ARG B:240 , LEU B:244 , GLU B:255 , GLU B:411 , TRP B:412 , GLY B:413
binding site for residue GOL B 603
18
AD9
SOFTWARE
PRO B:46 , GLN B:47 , SER B:48
binding site for residue GOL B 604
19
AE1
SOFTWARE
TRP B:231 , THR B:284 , LEU B:286 , SER B:287 , ASN B:397
binding site for residue GOL B 605
20
AE2
SOFTWARE
PRO B:449 , GLU B:451 , ARG B:452 , ASP B:454 , ASN B:455 , TYR B:456 , GLU B:461
binding site for residue GOL B 606
21
AE3
SOFTWARE
ARG B:42 , LYS B:267
binding site for residue EDO B 607
22
AE4
SOFTWARE
LYS A:528 , ARG B:347 , GLN B:351 , GLU B:367
binding site for residue EDO B 608
23
AE5
SOFTWARE
HIS B:77 , GLU B:443
binding site for residue EDO B 609
24
AE6
SOFTWARE
ARG B:242 , VAL B:288
binding site for residue CL B 610
25
AE7
SOFTWARE
GLU B:197
binding site for residue CL B 611
26
AE8
SOFTWARE
ASN A:17 , THR A:24 , PG4 A:614 , HOH A:764
binding site for Poly-Saccharide residues NAG A 615 through NAG A 616 bound to ASN A 17
27
AE9
SOFTWARE
ARG A:14 , ILE A:55 , ASN A:57 , LYS B:12
binding site for Poly-Saccharide residues NAG A 617 through FUC A 619 bound to ASN A 57
28
AF1
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190
binding site for Poly-Saccharide residues NAG A 620 through NAG A 621 bound to ASN A 106
29
AF2
SOFTWARE
ASN A:241 , ASN A:245 , LYS A:248 , PHE A:278 , VAL A:280 , PRO A:281 , NAG B:622 , NAG B:623 , FUL B:624
binding site for Poly-Saccharide residues NAG A 622 through FUC A 624 bound to ASN A 241
30
AF3
SOFTWARE
SER A:338 , ASN A:341 , HOH A:702 , HOH A:727 , HOH A:799
binding site for Mono-Saccharide NAG A 625 bound to ASN A 341
31
AF4
SOFTWARE
TYR A:477 , ASN A:479 , ASN A:481 , GLU A:482 , THR A:483 , GLN A:484 , ASP B:87 , LEU B:88 , GLN B:270
binding site for Poly-Saccharide residues NAG A 626 through NAG A 627 bound to ASN A 481
32
AF5
SOFTWARE
GLU A:482 , ASN A:486 , SER A:487 , THR A:488 , THR A:508 , GLY B:75
binding site for Poly-Saccharide residues NAG A 628 through FUL A 630 bound to ASN A 486
33
AF6
SOFTWARE
ASN B:17 , HOH B:703
binding site for Mono-Saccharide NAG B 612 bound to ASN B 17
34
AF7
SOFTWARE
ARG B:14 , ASN B:57 , HOH B:783
binding site for Mono-Saccharide NAG B 613 bound to ASN B 57
35
AF8
SOFTWARE
ASN B:106 , ASN B:188
binding site for Mono-Saccharide NAG B 614 bound to ASN B 106
36
AF9
SOFTWARE
TYR B:237 , ASN B:241 , ASN B:245 , PHE B:278 , VAL B:280 , PRO B:281 , TYR B:282 , GLN B:380
binding site for Poly-Saccharide residues NAG B 615 through FUL B 617 bound to ASN B 241
37
AG1
SOFTWARE
GLU B:255 , ASN B:256
binding site for Poly-Saccharide residues NAG B 618 through FUL B 620 bound to ASN B 256
38
AG2
SOFTWARE
SER B:338 , ASN B:341 , HOH B:735
binding site for Mono-Saccharide NAG B 621 bound to ASN B 341
39
AG3
SOFTWARE
ARG A:240 , ASN A:241 , LEU A:244 , NAG A:622 , LYS B:427 , ASP B:454 , ASN B:455
binding site for Poly-Saccharide residues NAG B 622 through FUL B 624 bound to ASN B 455
40
AG4
SOFTWARE
ILE B:305 , TYR B:477 , ASN B:481 , GLU B:482
binding site for Mono-Saccharide NAG B 625 bound to ASN B 481
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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Sorry, no Info available
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