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5DYT
Asym. Unit
Info
Asym.Unit (369 KB)
Biol.Unit 1 (360 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH N-((1-BENZYLPIPERIDIN-3-YL)METHYL)-N-METHYLNAPHTHALENE-2-SULFONAMIDE
Authors
:
N. Coquelle, B. Brus, J. P. Colletier
Date
:
25 Sep 15 (Deposition) - 05 Oct 16 (Release) - 18 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Human Butyrylcholinesterase, Ad, Alzheimer Disease, Sulfonamide, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Kosak, B. Brus, D. Knez, R. Sink, S. Zakelj, J. Trontelj, A. Pislar, J. Slenc, M. Gobec, M. Zivin, L. Tratnjek, M. Perse, K. Saat, A. Podkowa B. Filipek, F. Nachon, X. Brazzolotto, A. Wieckowska, B. Malawska, J. Stojan, I. M. Rascan, J. Kos, N. Coquelle, J. P. Colletier, S. Gobec
Development Of An In-Vivo Active Reversible Butyrylcholinesterase Inhibitor.
Sci Rep V. 6 39495 2016
[
close entry info
]
Hetero Components
(9, 46)
Info
All Hetero Components
1a: N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]ME... (5HBa)
1b: N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]ME... (5HBb)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
4c: ALPHA-L-FUCOSE (FUCc)
4d: ALPHA-L-FUCOSE (FUCd)
5a: BETA-L-FUCOSE (FULa)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8a: DI(HYDROXYETHYL)ETHER (PEGa)
9a: UNKNOWN ATOM OR ION (UNXa)
9b: UNKNOWN ATOM OR ION (UNXb)
9c: UNKNOWN ATOM OR ION (UNXc)
9d: UNKNOWN ATOM OR ION (UNXd)
9e: UNKNOWN ATOM OR ION (UNXe)
9f: UNKNOWN ATOM OR ION (UNXf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5HB
2
Ligand/Ion
N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]METHYL}-N-METHYLNAPHTHALENE-2-SULFONAMIDE
2
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
5
FUL
1
Ligand/Ion
BETA-L-FUCOSE
6
GOL
5
Ligand/Ion
GLYCEROL
7
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
UNX
6
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:116 , GLY A:117 , GLN A:119 , THR A:120 , SER A:198 , SER A:287 , TRP A:430 , HIS A:438 , HOH A:703
binding site for residue 5HB A 616
02
AC2
SOFTWARE
LEU A:18 , TRP A:98 , ASP A:129 , LYS A:131
binding site for residue GOL A 617
03
AC3
SOFTWARE
ASN A:228 , TYR A:396 , PRO A:401 , TRP A:522 , THR A:523 , HOH A:760
binding site for residue GOL A 618
04
AC4
SOFTWARE
TYR A:33 , SER A:48 , LEU A:49 , LEU A:173 , TRP A:177
binding site for residue GOL A 619
05
AC5
SOFTWARE
HIS A:77 , GLU A:443
binding site for residue EDO A 620
06
AC6
SOFTWARE
PHE B:278 , NAG B:604 , NAG B:605
binding site for residue FUL B 606
07
AC7
SOFTWARE
GLY B:116 , GLY B:117 , GLN B:119 , THR B:120 , SER B:198 , TRP B:231 , LEU B:286 , SER B:287 , PHE B:329 , TRP B:430 , MET B:437 , HIS B:438 , TYR B:440 , HOH B:711 , HOH B:812
binding site for residue 5HB B 612
08
AC8
SOFTWARE
LEU B:18 , TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131
binding site for residue GOL B 613
09
AC9
SOFTWARE
TRP B:231 , LEU B:286 , SER B:287 , VAL B:288 , ASN B:397 , EDO B:616
binding site for residue GOL B 614
10
AD1
SOFTWARE
ARG B:42 , LYS B:267 , PRO B:269
binding site for residue EDO B 615
11
AD2
SOFTWARE
PRO B:230 , TRP B:231 , VAL B:233 , THR B:234 , GLU B:238 , VAL B:288 , GOL B:614
binding site for residue EDO B 616
12
AD3
SOFTWARE
ASN B:455
binding site for residue EDO B 617
13
AD4
SOFTWARE
HIS B:77 , MET B:81 , SER B:425 , LYS B:427 , LEU B:428 , PRO B:429 , GLU B:443
binding site for residue PEG B 621
14
AD5
SOFTWARE
ASN A:17
binding site for Mono-Saccharide NAG A 601 bound to ASN A 17
15
AD6
SOFTWARE
ILE A:55 , ASN A:57
binding site for Poly-Saccharide residues NAG A 602 through FUC A 604 bound to ASN A 57
16
AD7
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190
binding site for Poly-Saccharide residues NAG A 605 through NAG A 606 bound to ASN A 106
17
AD8
SOFTWARE
ASN A:241 , ASN A:245 , LYS A:248 , PHE A:278 , PRO A:281 , NAG B:609 , FUC B:610
binding site for Poly-Saccharide residues NAG A 607 through FUC A 609 bound to ASN A 241
18
AD9
SOFTWARE
SER A:338 , ASN A:341 , HOH A:713 , HOH A:793 , HOH A:798
binding site for Mono-Saccharide NAG A 610 bound to ASN A 341
19
AE1
SOFTWARE
TYR A:477 , ASN A:479 , ASN A:481 , GLU A:482 , THR A:483 , GLN A:484 , CSO B:66 , ASP B:87 , LEU B:88 , GLN B:270
binding site for Poly-Saccharide residues NAG A 611 through NAG A 612 bound to ASN A 481
20
AE2
SOFTWARE
ASN A:486 , SER A:487 , THR A:488 , THR A:508
binding site for Poly-Saccharide residues NAG A 613 through FUC A 615 bound to ASN A 486
21
AE3
SOFTWARE
ILE B:4 , ASN B:17
binding site for Mono-Saccharide NAG B 601 bound to ASN B 17
22
AE4
SOFTWARE
ASN B:57
binding site for Mono-Saccharide NAG B 602 bound to ASN B 57
23
AE5
SOFTWARE
ASN B:106 , ASN B:188 , HOH B:703
binding site for Mono-Saccharide NAG B 603 bound to ASN B 106
24
AE6
SOFTWARE
TYR B:237 , ASN B:241 , ASN B:245 , TYR B:282 , FUL B:606 , HOH B:785
binding site for Poly-Saccharide residues NAG B 604 through NAG B 605 bound to ASN B 241
25
AE7
SOFTWARE
ASN B:256 , GLU B:411
binding site for Mono-Saccharide NAG B 607 bound to ASN B 256
26
AE8
SOFTWARE
SER B:338 , ASN B:341 , HOH B:701 , HOH B:716 , HOH B:744
binding site for Mono-Saccharide NAG B 608 bound to ASN B 341
27
AE9
SOFTWARE
TYR A:237 , ARG A:240 , NAG A:607 , LYS B:427 , ASP B:454 , ASN B:455
binding site for Poly-Saccharide residues NAG B 609 through FUC B 610 bound to ASN B 455
28
AF1
SOFTWARE
TYR B:477 , ASN B:481 , GLU B:482 , HOH B:756
binding site for Mono-Saccharide NAG B 611 bound to ASN B 481
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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(0, 0)
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Exons
(0, 0)
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Pfam Domains
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