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5DYF
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (432 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF AMINOPEPTIDASE N IN COMPLEX WITH N-BENZYL-1, 2-DIAMINOETHYLPHOSPHONIC ACID
Authors
:
B. Nocek, A. Joachimiak, S. Vassiliou, L. Berlicki, A. Mucha, Midwest For Structural Genomics (Mcsg)
Date
:
24 Sep 15 (Deposition) - 25 Nov 15 (Release) - 25 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aminopeptidasen, Inhibitor Complex, N-Benzyl-1, 2- Diaminoethylphosphonic Acid, Hydrolase-Hydrolase Inhibitor Complex, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
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Reference
:
B. Nocek, A. Joachimiak, S. Vassiliou, L. Berlicki, A. Mucha, Midwest Center For Structural Genomics (Mcsg)
The Crystal Structure Of Aminopeptidase N In Complex With N-Benzyl-1, 2-Diaminoethylphosphonic Acid
To Be Published
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Hetero Components
(6, 35)
Info
All Hetero Components
1a: [(1R)-1-AMINO-2-(BENZYLAMINO)ETHYL... (5HRa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: IMIDAZOLE (IMDa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
6a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
5HR
1
Ligand/Ion
[(1R)-1-AMINO-2-(BENZYLAMINO)ETHYL]PHOSPHONIC ACID
2
GOL
4
Ligand/Ion
GLYCEROL
3
IMD
1
Ligand/Ion
IMIDAZOLE
4
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
10
Ligand/Ion
SULFATE ION
6
ZN
1
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:293 , HIS A:297 , GLU A:316 , 5HR A:912
binding site for residue ZN A 901
02
AC2
SOFTWARE
ARG A:781 , ARG A:822 , HOH A:1048 , HOH A:1149
binding site for residue SO4 A 902
03
AC3
SOFTWARE
ARG A:636 , HOH A:1329 , HOH A:1464 , HOH A:1465 , HOH A:1492
binding site for residue SO4 A 903
04
AC4
SOFTWARE
THR A:565 , ARG A:568 , ARG A:569 , HOH A:1486
binding site for residue SO4 A 904
05
AC5
SOFTWARE
MSE A:469 , THR A:470 , ASP A:471 , HOH A:1101 , HOH A:1200 , HOH A:1342
binding site for residue SO4 A 905
06
AC6
SOFTWARE
ALA A:331 , SER A:332 , HOH A:1373
binding site for residue SO4 A 906
07
AC7
SOFTWARE
LEU A:402 , ARG A:406
binding site for residue SO4 A 907
08
AC8
SOFTWARE
ALA A:191 , VAL A:192 , ASN A:831 , LYS A:838 , LYS A:842 , HOH A:1004 , HOH A:1021 , HOH A:1316
binding site for residue SO4 A 908
09
AC9
SOFTWARE
ARG A:203
binding site for residue SO4 A 909
10
AD1
SOFTWARE
ARG A:277 , HOH A:1366
binding site for residue SO4 A 910
11
AD2
SOFTWARE
GLN A:851 , GLU A:852 , GLY A:853
binding site for residue SO4 A 911
12
AD3
SOFTWARE
MSE A:103 , GLN A:115 , GLU A:117 , MSE A:256 , ALA A:258 , GLU A:260 , HIS A:293 , GLU A:294 , HIS A:297 , LYS A:315 , GLU A:316 , ASN A:369 , TYR A:377 , GLN A:818 , ZN A:901 , HOH A:1055
binding site for residue 5HR A 912
13
AD4
SOFTWARE
THR A:199 , ARG A:203 , TYR A:241 , ASP A:242 , LEU A:243 , ASP A:244 , HOH A:1328
binding site for residue GOL A 913
14
AD5
SOFTWARE
ALA A:522
binding site for residue GOL A 914
15
AD6
SOFTWARE
THR A:282 , TRP A:712 , HOH A:1105 , HOH A:1377 , HOH A:1420
binding site for residue GOL A 915
16
AD7
SOFTWARE
ASP A:242 , ARG A:303 , HOH A:1322 , HOH A:1466
binding site for residue GOL A 916
17
AD8
SOFTWARE
HIS A:24 , ARG A:37
binding site for residue IMD A 917
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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