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5DTO
Asym. Unit
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Asym.Unit (304 KB)
Biol.Unit 1 (297 KB)
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(1)
Title
:
DENGUE VIRUS FULL LENGTH NS5 COMPLEXED WITH VIRAL CAP 0-RNA AND SAH
Authors
:
Y. Zhao, T. S. Soh, S. P. Lim, K. Y. Chung, K. Swaminathan, S. G. Vasudevan Y. Shi, J. Lescar, D. Luo
Date
:
18 Sep 15 (Deposition) - 25 Nov 15 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dengue Virus, Nonstructural Protein 5, 2'Omtase, Cap0 Rna, Innate Immunity Evasion, Viral Protein-Rna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhao, T. S. Soh, S. P. Lim, K. Y. Chung, K. Swaminathan, S. G. Vasudevan, P. -Y. Shi, J. Lescar, D. Luo
Molecular Basis For Specific Viral Rna Recognition And 2'-O-Ribose Methylation By The Dengue Virus Nonstructural Protein 5 (Ns5)
Proc. Natl. Acad. Sci. Usa V. 112 14834 2015
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPH... (M7Ga)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
M7G
1
Ligand/Ion
7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
5
ZN
2
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:437 , HIS A:441 , CYS A:446 , CYS A:449
binding site for residue ZN A 1001
2
AC2
SOFTWARE
HIS A:712 , HIS A:714 , CYS A:728 , CYS A:847
binding site for residue ZN A 1002
3
AC3
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:85 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , GLU A:111 , LYS A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , HOH A:1118 , HOH A:1255 , A B:1 , G B:2 , HOH B:202 , HOH B:211
binding site for residue SAH A 1003
4
AC4
SOFTWARE
ASP A:533 , ASP A:664 , HOH A:1144 , HOH A:1145 , HOH A:1160 , HOH A:1301
binding site for residue MG A 1004
5
AC5
SOFTWARE
GLU A:428 , ARG A:499 , LYS A:656 , HOH A:1246
binding site for residue ACT A 1005
6
AC6
SOFTWARE
LYS A:14 , LEU A:17 , ASN A:18 , LEU A:20 , PHE A:25 , LYS A:29 , SER A:151 , PRO A:152 , ARG A:211 , SER A:213 , THR A:214 , A B:1 , MG B:102 , HOH B:201 , HOH B:203 , HOH B:204 , HOH B:205 , HOH B:207
binding site for residue M7G B 0
7
AC7
SOFTWARE
M7G B:0 , A B:1 , HOH B:201 , HOH B:205 , HOH B:207
binding site for residue MG B 102
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (304 KB)
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