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5DNF
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CC CHEMOKINE 5 (CCL5) OLIGOMER IN COMPLEX WITH HEPARIN
Authors
:
W. G. Liang, W. Tang
Date
:
10 Sep 15 (Deposition) - 13 Apr 16 (Release) - 18 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Keywords
:
Cc Chemokine, High Oligomer, Cytokine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. G. Liang, C. G. Triandafillou, T. Y. Huang, M. M. Zulueta, S. Banerjee, A. R. Dinner, S. C. Hung, W. J. Tang
Structural Basis For Oligomerization And Glycosaminoglycan Binding Of Ccl5 And Ccl3.
Proc. Natl. Acad. Sci. Usa V. 113 5000 2016
[
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Hetero Components
(7, 46)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
3a: ALPHA D-GALACTOSE (GLAa)
3b: ALPHA D-GALACTOSE (GLAb)
3c: ALPHA D-GALACTOSE (GLAc)
3d: ALPHA D-GALACTOSE (GLAd)
3e: ALPHA D-GALACTOSE (GLAe)
3f: ALPHA D-GALACTOSE (GLAf)
4a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
4b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
4c: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSc)
5a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
5b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
5c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
5d: N,O6-DISULFO-GLUCOSAMINE (SGNd)
5e: N,O6-DISULFO-GLUCOSAMINE (SGNe)
5f: N,O6-DISULFO-GLUCOSAMINE (SGNf)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
7a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
5
Ligand/Ion
BETA-D-GLUCOSE
2
CL
20
Ligand/Ion
CHLORIDE ION
3
GLA
6
Ligand/Ion
ALPHA D-GALACTOSE
4
IDS
3
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
5
SGN
6
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
6
SO4
5
Ligand/Ion
SULFATE ION
7
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:5 , ASP A:6 , THR A:8 , SER A:31 , GLA A:101 , HOH A:218 , SER D:5 , ASP D:6 , THR D:8 , SER D:31
binding site for residue BGC A 102
02
AC2
SOFTWARE
GLU A:54 , LYS A:55 , LYS A:56 , CL A:105
binding site for residue SO4 A 103
03
AC3
SOFTWARE
SER A:35 , SER B:35
binding site for residue CL A 104
04
AC4
SOFTWARE
SO4 A:103
binding site for residue CL A 105
05
AC5
SOFTWARE
ARG B:21 , ILE B:24
binding site for residue CL B 101
06
AC6
SOFTWARE
LYS B:56
binding site for residue CL B 102
07
AC7
SOFTWARE
TYR B:27 , GLU B:66
binding site for residue TRS B 103
08
AC8
SOFTWARE
ASP C:6 , THR C:8 , SER C:31 , LYS C:33 , ASP F:6 , THR F:8 , SER F:31
binding site for residue BGC C 102
09
AC9
SOFTWARE
SER C:35 , SER D:35
binding site for residue CL C 103
10
AD1
SOFTWARE
ARG C:21 , ILE C:24
binding site for residue CL C 104
11
AD2
SOFTWARE
ARG C:59 , PRO E:20
binding site for residue CL C 106
12
AD3
SOFTWARE
ILE D:24
binding site for residue CL D 102
13
AD4
SOFTWARE
GLU E:66 , TYR G:27 , GLU G:66
binding site for residue BGC E 101
14
AD5
SOFTWARE
LYS E:55 , LYS E:56 , HOH E:201
binding site for residue SO4 E 102
15
AD6
SOFTWARE
ARG E:21 , ILE E:24
binding site for residue CL E 103
16
AD7
SOFTWARE
LYS F:55 , LYS F:56 , TRP F:57 , CL F:105
binding site for residue SO4 F 102
17
AD8
SOFTWARE
SER E:35 , SER F:35
binding site for residue CL F 103
18
AD9
SOFTWARE
ASN F:52
binding site for residue CL F 104
19
AE1
SOFTWARE
LYS F:56 , SO4 F:102
binding site for residue CL F 105
20
AE2
SOFTWARE
GLU G:26 , GLN G:48 , HOH G:211
binding site for residue BGC G 101
21
AE3
SOFTWARE
LYS G:55 , LYS G:56 , HOH G:215
binding site for residue SO4 G 102
22
AE4
SOFTWARE
ARG G:21 , ILE G:24
binding site for residue CL G 103
23
AE5
SOFTWARE
MET G:67
binding site for residue CL G 104
24
AE6
SOFTWARE
ASP H:6 , THR H:8 , SER H:31 , LYS H:33 , HOH H:202 , THR I:8 , SER I:31 , LYS I:33
binding site for residue BGC H 102
25
AE7
SOFTWARE
GLU H:54 , LYS H:55 , LYS H:56 , CL H:104
binding site for residue SO4 H 103
26
AE8
SOFTWARE
TRP H:57 , SO4 H:103
binding site for residue CL H 104
27
AE9
SOFTWARE
SER H:35
binding site for residue CL H 105
28
AF1
SOFTWARE
ARG I:21 , ILE I:24 , HOH I:208
binding site for residue CL I 102
29
AF2
SOFTWARE
SER A:4 , SER A:5 , BGC A:102 , HOH A:205 , PRO D:9 , GLU D:26 , PHE D:28
binding site for Mono-Saccharide GLA A 101 bound to SER A 4
30
AF3
SOFTWARE
SER C:4 , SER C:5 , HOH C:206 , PRO F:9 , GLU F:26 , PHE F:28 , GLN F:48
binding site for Mono-Saccharide GLA C 101 bound to SER C 4
31
AF4
SOFTWARE
PRO A:9 , GLU A:26 , PHE A:28 , GLN A:48 , HOH A:218 , SER D:4 , HOH D:208 , HOH D:212
binding site for Mono-Saccharide GLA D 101 bound to SER D 4
32
AF5
SOFTWARE
PRO C:9 , PHE C:28 , SER F:4 , SER F:5 , HOH F:215
binding site for Mono-Saccharide GLA F 101 bound to SER F 4
33
AF6
SOFTWARE
SER H:4 , SER H:5 , HOH H:206 , PRO I:9 , GLU I:26 , PHE I:28
binding site for Mono-Saccharide GLA H 101 bound to SER H 4
34
AF7
SOFTWARE
PRO H:9 , PHE H:28 , GLN H:48 , HOH H:202 , SER I:4 , SER I:5 , HOH I:207
binding site for Mono-Saccharide GLA I 101 bound to SER I 4
35
AF8
SOFTWARE
GLU C:54 , LYS C:55 , LYS C:56 , TRP C:57 , ARG C:59
binding site for Poly-Saccharide residues SGN C 107 through SGN C 109
36
AF9
SOFTWARE
ARG C:21 , ILE C:24 , GLU C:54 , LYS C:55 , LYS C:56 , TRP C:57 , ARG C:59 , SGN C:107 , GLU D:54 , LYS D:55 , LYS D:56 , TRP D:57 , ARG D:59 , PRO E:20
binding site for Poly-Saccharide residues SGN D 104 through SGN D 106
37
AG1
SOFTWARE
GLU D:54 , LYS D:55 , LYS D:56 , TRP D:57 , ARG D:59 , GLU I:54 , LYS I:56 , TRP I:57 , ARG I:59 , GLU I:60
binding site for Poly-Saccharide residues SGN I 104 through SGN I 106
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Pfam Domains
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