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5DN9
Asym. Unit
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Asym.Unit (252 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CANDIDA BOIDINII FORMATE DEHYDROGENASE COMPLEXED WITH NAD+ AND AZIDE
Authors
:
Q. Guo, L. Gakhar, K. Wichersham, K. Francis, A. Vardi-Kilshtain, D. T. C. M. Cheatum, A. Kohen
Date
:
09 Sep 15 (Deposition) - 04 May 16 (Release) - 25 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transition State, Ternary Complex, Oxidoreductase
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Reference
:
Q. Guo, L. Gakhar, K. Wickersham, K. Francis, A. Vardi-Kilshtain, D. T. Major, C. M. Cheatum, A. Kohen
Structural And Kinetic Studies Of Formate Dehydrogenase Fro Candida Boidinii.
Biochemistry V. 55 2760 2016
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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No.
Name
Count
Type
Full Name
1
AZI
2
Ligand/Ion
AZIDE ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:69 , VAL A:93 , ASN A:119 , VAL A:120 , VAL A:123 , GLY A:171 , GLY A:173 , ARG A:174 , ILE A:175 , TYR A:194 , ASP A:195 , TYR A:196 , ALA A:229 , PRO A:230 , HIS A:232 , THR A:235 , THR A:256 , ALA A:257 , ARG A:258 , ASP A:282 , VAL A:283 , HIS A:311 , SER A:313 , GLY A:314 , ALA A:357 , AZI A:502 , CL A:503 , HOH A:668 , HOH A:671 , HOH A:688 , HOH A:702 , HOH A:713 , HOH A:735 , HOH A:752 , HOH A:799 , HOH A:866 , HOH A:932
binding site for residue NAD A 501
2
AC2
SOFTWARE
PRO A:68 , PHE A:69 , GLY A:92 , VAL A:93 , ASN A:119 , ARG A:258 , HIS A:311 , NAD A:501
binding site for residue AZI A 502
3
AC3
SOFTWARE
HIS A:232 , NAD A:501 , HOH A:1016 , HOH A:1058
binding site for residue CL A 503
4
AC4
SOFTWARE
PHE B:69 , VAL B:93 , ASN B:119 , VAL B:120 , VAL B:123 , GLY B:171 , GLY B:173 , ARG B:174 , ILE B:175 , TYR B:194 , ASP B:195 , TYR B:196 , ALA B:229 , PRO B:230 , HIS B:232 , THR B:235 , THR B:256 , ALA B:257 , ARG B:258 , ASP B:282 , VAL B:283 , HIS B:311 , SER B:313 , GLY B:314 , ALA B:357 , AZI B:502 , CL B:503 , HOH B:675 , HOH B:684 , HOH B:685 , HOH B:690 , HOH B:706 , HOH B:759 , HOH B:772 , HOH B:789 , HOH B:874 , HOH B:950
binding site for residue NAD B 501
5
AC5
SOFTWARE
PRO B:68 , PHE B:69 , GLY B:92 , VAL B:93 , ASN B:119 , ARG B:258 , HIS B:311 , NAD B:501
binding site for residue AZI B 502
6
AC6
SOFTWARE
HIS B:232 , NAD B:501 , HOH B:1032
binding site for residue CL B 503
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (252 KB)
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