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5DLV
Asym. Unit
Info
Asym.Unit (571 KB)
Biol.Unit 1 (283 KB)
Biol.Unit 2 (284 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUTOTAXIN (ENPP2) WITH TAUROURSODEOXYCHOLIC ACID (TUDCA)
Authors
:
W. J. Keune, T. Heidebrecht, E. Von Castelmur, R. P. Joosten, A. Perrak
Date
:
07 Sep 15 (Deposition) - 13 Apr 16 (Release) - 27 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Autotaxin, Enpp2, Lpa, Steroids, Bile Salts, Tudca, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. J. Keune, J. Hausmann, R. Bolier, D. Tolenaars, A. Kremer, T. Heidebrecht, R. P. Joosten, M. Sunkara, A. J. Morris, E. Matas-Rico W. H. Moolenaar, R. P. Oude Elferink, A. Perrakis
Steroid Binding To Autotaxin Links Bile Salts And Lysophosphatidic Acid Signalling.
Nat Commun V. 7 11248 2016
[
close entry info
]
Hetero Components
(11, 72)
Info
All Hetero Components
01a: 2-{[(3ALPHA,5BETA,7ALPHA,8ALPHA,14... (5D5a)
01b: 2-{[(3ALPHA,5BETA,7ALPHA,8ALPHA,14... (5D5b)
02a: BETA-D-MANNOSE (BMAa)
02b: BETA-D-MANNOSE (BMAb)
03a: CALCIUM ION (CAa)
03b: CALCIUM ION (CAb)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
04c: GLYCEROL (GOLc)
04d: GLYCEROL (GOLd)
04e: GLYCEROL (GOLe)
04f: GLYCEROL (GOLf)
04g: GLYCEROL (GOLg)
04h: GLYCEROL (GOLh)
04i: GLYCEROL (GOLi)
04j: GLYCEROL (GOLj)
04k: GLYCEROL (GOLk)
05a: IODIDE ION (IODa)
05aa: IODIDE ION (IODaa)
05b: IODIDE ION (IODb)
05c: IODIDE ION (IODc)
05d: IODIDE ION (IODd)
05e: IODIDE ION (IODe)
05f: IODIDE ION (IODf)
05g: IODIDE ION (IODg)
05h: IODIDE ION (IODh)
05i: IODIDE ION (IODi)
05j: IODIDE ION (IODj)
05k: IODIDE ION (IODk)
05l: IODIDE ION (IODl)
05m: IODIDE ION (IODm)
05n: IODIDE ION (IODn)
05o: IODIDE ION (IODo)
05p: IODIDE ION (IODp)
05q: IODIDE ION (IODq)
05r: IODIDE ION (IODr)
05s: IODIDE ION (IODs)
05t: IODIDE ION (IODt)
05u: IODIDE ION (IODu)
05v: IODIDE ION (IODv)
05w: IODIDE ION (IODw)
05x: IODIDE ION (IODx)
05y: IODIDE ION (IODy)
05z: IODIDE ION (IODz)
06a: ALPHA-D-MANNOSE (MANa)
06b: ALPHA-D-MANNOSE (MANb)
06c: ALPHA-D-MANNOSE (MANc)
06d: ALPHA-D-MANNOSE (MANd)
06e: ALPHA-D-MANNOSE (MANe)
06f: ALPHA-D-MANNOSE (MANf)
06g: ALPHA-D-MANNOSE (MANg)
06h: ALPHA-D-MANNOSE (MANh)
06i: ALPHA-D-MANNOSE (MANi)
06j: ALPHA-D-MANNOSE (MANj)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
08b: N-ACETYL-D-GLUCOSAMINE (NAGb)
08c: N-ACETYL-D-GLUCOSAMINE (NAGc)
08d: N-ACETYL-D-GLUCOSAMINE (NAGd)
07a: SODIUM ION (NAa)
07b: SODIUM ION (NAb)
07c: SODIUM ION (NAc)
07d: SODIUM ION (NAd)
09a: PHOSPHATE ION (PO4a)
09b: PHOSPHATE ION (PO4b)
10a: THIOCYANATE ION (SCNa)
10b: THIOCYANATE ION (SCNb)
10c: THIOCYANATE ION (SCNc)
10d: THIOCYANATE ION (SCNd)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
11c: ZINC ION (ZNc)
11d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5D5
2
Ligand/Ion
2-{[(3ALPHA,5BETA,7ALPHA,8ALPHA,14BETA,17ALPHA)-3,7-DIHYDROXY-24-OXOCHOLAN-24-YL]AMINO}ETHANESULFONIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
GOL
11
Ligand/Ion
GLYCEROL
5
IOD
27
Ligand/Ion
IODIDE ION
6
MAN
10
Ligand/Ion
ALPHA-D-MANNOSE
7
NA
4
Ligand/Ion
SODIUM ION
8
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PO4
2
Ligand/Ion
PHOSPHATE ION
10
SCN
4
Ligand/Ion
THIOCYANATE ION
11
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:311 , HIS A:315 , HIS A:474 , PO4 A:927
binding site for residue ZN A 910
02
AC2
SOFTWARE
ASP A:171 , THR A:209 , ASP A:358 , HIS A:359 , PO4 A:927
binding site for residue ZN A 911
03
AC3
SOFTWARE
ASP A:739 , ASN A:741 , ASP A:743 , LEU A:745 , ASP A:747 , HOH A:1159
binding site for residue CA A 912
04
AC4
SOFTWARE
ASN A:230 , ARG A:391
binding site for residue IOD A 913
05
AC5
SOFTWARE
HIS A:281 , SER A:307 , THR A:334
binding site for residue IOD A 916
06
AC6
SOFTWARE
LEU A:788
binding site for residue IOD A 917
07
AC7
SOFTWARE
MET A:232
binding site for residue IOD A 918
08
AC8
SOFTWARE
ASP A:782
binding site for residue IOD A 919
09
AC9
SOFTWARE
HOH A:1290
binding site for residue IOD A 920
10
AD1
SOFTWARE
HIS A:197 , PRO A:199 , LYS A:499 , PRO B:70
binding site for residue IOD A 921
11
AD2
SOFTWARE
ARG A:746
binding site for residue IOD A 922
12
AD3
SOFTWARE
TYR A:496 , ARG A:535 , HOH A:1298
binding site for residue IOD A 923
13
AD4
SOFTWARE
SER A:846
binding site for residue IOD A 924
14
AD5
SOFTWARE
ARG B:329
binding site for residue IOD A 926
15
AD6
SOFTWARE
ASP A:171 , THR A:209 , ASN A:230 , ASP A:311 , HIS A:315 , HIS A:359 , HIS A:474 , ZN A:910 , ZN A:911
binding site for residue PO4 A 927
16
AD7
SOFTWARE
TYR A:669 , ASP A:672 , MET A:675 , HOH A:1246 , HOH A:1252 , HOH A:1274
binding site for residue NA A 928
17
AD8
SOFTWARE
ASN A:801 , SER A:804 , SER A:807 , HOH A:1175 , HOH A:1224 , HOH A:1273
binding site for residue NA A 929
18
AD9
SOFTWARE
LEU A:78 , SER A:81 , TYR A:82 , ASP A:171 , THR A:209 , PHE A:210 , LEU A:213 , LYS A:248 , PHE A:249 , HIS A:251 , TRP A:254 , TRP A:260 , PHE A:274 , TRP A:275 , SER A:276 , VAL A:277 , ARG A:284 , TYR A:306
binding site for residue 5D5 A 930
19
AE1
SOFTWARE
PHE A:273
binding site for residue SCN A 931
20
AE2
SOFTWARE
GLY A:226 , ASN A:437 , ARG A:438 , MAN A:905 , HOH A:1005 , HOH A:1181
binding site for residue SCN A 932
21
AE3
SOFTWARE
GLU A:546 , ARG A:600 , ARG A:839
binding site for residue GOL A 933
22
AE4
SOFTWARE
VAL A:110 , ARG A:710 , ASN A:801 , HOH A:1180
binding site for residue GOL A 934
23
AE5
SOFTWARE
THR A:377 , ASN A:378 , THR A:406 , ILE A:407 , ALA A:410
binding site for residue GOL A 935
24
AE6
SOFTWARE
THR A:406 , ALA A:409 , ALA A:410 , LYS A:414
binding site for residue GOL A 936
25
AE7
SOFTWARE
ILE A:408 , THR A:412 , LYS A:421 , PRO A:422 , ASP A:802 , GLU A:803 , HOH A:1019 , HOH A:1028 , HOH A:1032 , HOH A:1071
binding site for residue GOL A 937
26
AE8
SOFTWARE
PHE A:679 , TYR A:684 , LYS A:709 , ALA A:713 , GLN A:716
binding site for residue GOL A 938
27
AE9
SOFTWARE
ASP B:311 , HIS B:315 , HIS B:474 , PO4 B:924
binding site for residue ZN B 908
28
AF1
SOFTWARE
ASP B:171 , THR B:209 , ASP B:358 , HIS B:359 , PO4 B:924
binding site for residue ZN B 909
29
AF2
SOFTWARE
ASP B:739 , ASN B:741 , ASP B:743 , LEU B:745 , ASP B:747 , HOH B:1181
binding site for residue CA B 910
30
AF3
SOFTWARE
ARG B:391
binding site for residue IOD B 911
31
AF4
SOFTWARE
CYS B:566
binding site for residue IOD B 913
32
AF5
SOFTWARE
HIS B:281 , SER B:307 , THR B:334
binding site for residue IOD B 914
33
AF6
SOFTWARE
LEU B:788
binding site for residue IOD B 915
34
AF7
SOFTWARE
MET B:232
binding site for residue IOD B 916
35
AF8
SOFTWARE
ASP B:782
binding site for residue IOD B 917
36
AF9
SOFTWARE
VAL B:453
binding site for residue IOD B 918
37
AG1
SOFTWARE
HIS B:197
binding site for residue IOD B 919
38
AG2
SOFTWARE
ARG B:746 , HOH B:1188
binding site for residue IOD B 920
39
AG3
SOFTWARE
TYR B:496 , ARG B:535
binding site for residue IOD B 921
40
AG4
SOFTWARE
SER B:846
binding site for residue IOD B 922
41
AG5
SOFTWARE
HOH B:1269
binding site for residue IOD B 923
42
AG6
SOFTWARE
ASP B:171 , THR B:209 , ASN B:230 , ASP B:311 , HIS B:315 , HIS B:359 , HIS B:474 , ZN B:908 , ZN B:909
binding site for residue PO4 B 924
43
AG7
SOFTWARE
TYR B:669 , ASP B:672 , MET B:675 , HOH B:1192 , HOH B:1250 , HOH B:1276
binding site for residue NA B 925
44
AG8
SOFTWARE
ASN B:801 , SER B:804 , SER B:807 , HOH B:1160 , HOH B:1183 , HOH B:1253
binding site for residue NA B 926
45
AG9
SOFTWARE
LYS A:183 , LEU B:78 , SER B:81 , TYR B:82 , ASP B:171 , THR B:209 , PHE B:210 , LEU B:213 , LYS B:248 , PHE B:249 , HIS B:251 , TRP B:254 , TRP B:260 , PHE B:274 , TRP B:275 , VAL B:277 , ARG B:284 , TYR B:306
binding site for residue 5D5 B 927
46
AH1
SOFTWARE
PHE B:273
binding site for residue SCN B 928
47
AH2
SOFTWARE
ASN B:437 , MAN B:905 , HOH B:1135
binding site for residue SCN B 929
48
AH3
SOFTWARE
GLU B:546 , ARG B:600 , ARG B:839
binding site for residue GOL B 930
49
AH4
SOFTWARE
VAL B:110 , ALA B:707 , ARG B:710 , ASN B:801
binding site for residue GOL B 931
50
AH5
SOFTWARE
ASN B:378 , THR B:406 , ILE B:407 , ALA B:410
binding site for residue GOL B 932
51
AH6
SOFTWARE
GLU B:803 , SER B:804 , GLU B:817 , LEU B:818 , MET B:821 , HOH B:1018 , HOH B:1051
binding site for residue GOL B 933
52
AH7
SOFTWARE
GLY B:678 , PHE B:679 , TYR B:684 , LYS B:709 , ALA B:713 , GLN B:716
binding site for residue GOL B 934
53
AH8
SOFTWARE
LEU A:220 , GLU A:223 , SER A:224 , GLY A:255 , GLY A:256 , GLN A:257 , ASN A:436 , ASN A:437 , PRO A:522 , ASN A:524 , LEU A:745 , HIS A:831 , SCN A:932 , HOH A:1005 , HOH A:1013 , HOH A:1015 , HOH A:1018 , HOH A:1036 , HOH A:1039 , HOH A:1040 , HOH A:1041 , HOH A:1042 , HOH A:1050 , HOH A:1051 , HOH A:1082 , HOH A:1181 , HOH A:1190 , HOH A:1193 , HOH A:1209 , HOH A:1247 , CYS B:137 , GLY B:139 , ASP B:145
binding site for Poly-Saccharide residues NAG A 901 through MAN A 909 bound to ASN A 524
54
AH9
SOFTWARE
GLU B:223 , SER B:224 , ASN B:436 , ASN B:437 , PRO B:522 , ASN B:524 , LEU B:745 , HIS B:831 , SCN B:929 , HOH B:1010 , HOH B:1012 , HOH B:1020 , HOH B:1045 , HOH B:1050 , HOH B:1092 , HOH B:1117 , HOH B:1135 , HOH B:1147 , HOH B:1154 , HOH B:1172
binding site for Poly-Saccharide residues NAG B 901 through MAN B 907 bound to ASN B 524
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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