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5DLT
Asym. Unit
Info
Asym.Unit (293 KB)
Biol.Unit 1 (285 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUTOTAXIN (ENPP2) WITH 7-ALPHA-HYDROXYCHOLESTEROL
Authors
:
J. Hausmann, R. P. Joosten, A. Perrakis
Date
:
07 Sep 15 (Deposition) - 13 Apr 16 (Release) - 27 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Autotaxin, Enpp2, Lpa, Steroids, Bile Salts, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. J. Keune, J. Hausmann, R. Bolier, D. Tolenaars, A. Kremer, T. Heidebrecht, R. P. Joosten, M. Sunkara, A. J. Morris, E. Matas-Rico W. H. Moolenaar, R. P. Oude Elferink, A. Perrakis
Steroid Binding To Autotaxin Links Bile Salts And Lysophosphatidic Acid Signalling.
Nat Commun V. 7 11248 2016
[
close entry info
]
Hetero Components
(10, 38)
Info
All Hetero Components
01a: 7ALPHA-HYDROXYCHOLESTEROL (5JKa)
02a: BETA-D-MANNOSE (BMAa)
03a: CALCIUM ION (CAa)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
04c: GLYCEROL (GOLc)
04d: GLYCEROL (GOLd)
04e: GLYCEROL (GOLe)
04f: GLYCEROL (GOLf)
04g: GLYCEROL (GOLg)
05a: IODIDE ION (IODa)
05b: IODIDE ION (IODb)
05c: IODIDE ION (IODc)
05d: IODIDE ION (IODd)
05e: IODIDE ION (IODe)
05f: IODIDE ION (IODf)
05g: IODIDE ION (IODg)
05h: IODIDE ION (IODh)
05i: IODIDE ION (IODi)
05j: IODIDE ION (IODj)
07a: N-ACETYL-D-GLUCOSAMINE (NAGa)
07b: N-ACETYL-D-GLUCOSAMINE (NAGb)
06a: SODIUM ION (NAa)
06b: SODIUM ION (NAb)
08a: THIOCYANATE ION (SCNa)
08b: THIOCYANATE ION (SCNb)
08c: THIOCYANATE ION (SCNc)
08d: THIOCYANATE ION (SCNd)
08e: THIOCYANATE ION (SCNe)
08f: THIOCYANATE ION (SCNf)
08g: THIOCYANATE ION (SCNg)
08h: THIOCYANATE ION (SCNh)
08i: THIOCYANATE ION (SCNi)
08j: THIOCYANATE ION (SCNj)
08k: THIOCYANATE ION (SCNk)
09a: PHOSPHOTHREONINE (TPOa)
10a: ZINC ION (ZNa)
10b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5JK
1
Ligand/Ion
7ALPHA-HYDROXYCHOLESTEROL
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
GOL
7
Ligand/Ion
GLYCEROL
5
IOD
10
Ligand/Ion
IODIDE ION
6
NA
2
Ligand/Ion
SODIUM ION
7
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
SCN
11
Ligand/Ion
THIOCYANATE ION
9
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
10
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TPO A:209 , ASP A:311 , HIS A:315 , HIS A:474 , HOH A:1236
binding site for residue ZN A 904
02
AC2
SOFTWARE
ASP A:171 , TPO A:209 , ASP A:358 , HIS A:359
binding site for residue ZN A 905
03
AC3
SOFTWARE
LEU A:78 , TYR A:214 , LYS A:248 , TRP A:254 , TRP A:260 , ILE A:261 , TRP A:275 , PHE A:777 , THR A:778 , SCN A:919 , HOH A:1002 , HOH A:1114
binding site for residue 5JK A 906
04
AC4
SOFTWARE
ASP A:739 , ASN A:741 , ASP A:743 , LEU A:745 , ASP A:747 , HOH A:1318
binding site for residue CA A 907
05
AC5
SOFTWARE
ASN A:230 , ARG A:391
binding site for residue IOD A 908
06
AC6
SOFTWARE
MET A:232 , ARG A:393
binding site for residue IOD A 909
07
AC7
SOFTWARE
ARG A:162
binding site for residue IOD A 910
08
AC8
SOFTWARE
ARG A:252
binding site for residue IOD A 911
09
AC9
SOFTWARE
GLN A:134 , HOH A:1287
binding site for residue IOD A 912
10
AD1
SOFTWARE
LEU A:564 , PRO A:654
binding site for residue IOD A 913
11
AD2
SOFTWARE
ASN A:576 , ASN A:582
binding site for residue IOD A 914
12
AD3
SOFTWARE
LEU A:788
binding site for residue IOD A 915
13
AD4
SOFTWARE
ASP A:782
binding site for residue IOD A 916
14
AD5
SOFTWARE
ARG A:540 , SER A:846
binding site for residue IOD A 917
15
AD6
SOFTWARE
TYR A:677 , LYS A:709
binding site for residue SCN A 918
16
AD7
SOFTWARE
TRP A:260 , PHE A:273 , PHE A:274 , 5JK A:906 , HOH A:1307
binding site for residue SCN A 919
17
AD8
SOFTWARE
LYS A:80 , VAL A:277 , SER A:278
binding site for residue SCN A 920
18
AD9
SOFTWARE
HIS A:281 , SER A:307 , ILE A:331 , THR A:334 , HOH A:1126
binding site for residue SCN A 921
19
AE1
SOFTWARE
TYR A:496 , ARG A:535
binding site for residue SCN A 922
20
AE2
SOFTWARE
HIS A:225 , ARG A:252 , TRP A:253 , GLY A:255 , ARG A:439 , LYS A:637 , GOL A:935 , HOH A:1018
binding site for residue SCN A 923
21
AE3
SOFTWARE
PRO A:322 , THR A:607 , SER A:608 , ILE A:624
binding site for residue SCN A 924
22
AE4
SOFTWARE
LYS A:80 , SER A:83 , SER A:84 , CYS A:85 , ASP A:90
binding site for residue SCN A 926
23
AE5
SOFTWARE
THR A:748 , GLU A:749
binding site for residue SCN A 927
24
AE6
SOFTWARE
TYR A:669 , ASP A:672 , MET A:675 , GOL A:931 , HOH A:1357 , HOH A:1414
binding site for residue NA A 928
25
AE7
SOFTWARE
ASN A:801 , SER A:804 , SER A:807 , HOH A:1361 , HOH A:1400 , HOH A:1438
binding site for residue NA A 929
26
AE8
SOFTWARE
PRO A:541 , THR A:542 , MET A:543
binding site for residue GOL A 930
27
AE9
SOFTWARE
TYR A:669 , LYS A:670 , MET A:675 , SER A:676 , TYR A:677 , NA A:928
binding site for residue GOL A 931
28
AF1
SOFTWARE
PRO A:522 , NAG A:901 , NAG A:902 , HOH A:1105
binding site for residue GOL A 932
29
AF2
SOFTWARE
CYS A:123 , GLY A:127 , ASP A:128 , CYS A:129 , LEU A:286 , LEU A:289 , GLY A:341 , GLN A:344 , LEU A:345
binding site for residue GOL A 933
30
AF3
SOFTWARE
PRO A:71 , PRO A:199 , TYR A:200
binding site for residue GOL A 934
31
AF4
SOFTWARE
HIS A:251 , ARG A:252 , TRP A:254 , LYS A:637 , SER A:725 , GLU A:726 , ASN A:728 , PHE A:777 , SCN A:923 , HOH A:1101
binding site for residue GOL A 935
32
AF5
SOFTWARE
PRO A:386 , GLY A:387 , HIS A:452 , VAL A:453 , ALA A:454 , LYS A:577 , HOH A:1007 , HOH A:1298 , HOH A:1403
binding site for residue GOL A 936
33
AF6
SOFTWARE
VAL A:447 , ARG A:449 , ASP A:477 , VAL A:480 , HOH A:1276 , HOH A:1284
binding site for residue SCN A 937
34
AF7
SOFTWARE
LEU A:220 , PRO A:522 , ASN A:524 , LEU A:745 , HIS A:831 , GOL A:932 , HOH A:1001 , HOH A:1049 , HOH A:1054 , HOH A:1083 , HOH A:1120 , HOH A:1204 , HOH A:1211
binding site for Poly-Saccharide residues NAG A 901 through BMA A 903 bound to ASN A 524
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (293 KB)
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