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5DJQ
Biol. Unit 2
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (346 KB)
Biol.Unit 2 (355 KB)
Biol.Unit 3 (348 KB)
Biol.Unit 4 (351 KB)
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(1)
Title
:
THE STRUCTURE OF CBB3 CYTOCHROME OXIDASE.
Authors
:
S. Buschmann, E. Warkentin, H. Xie, M. Kohlstaedt, J. D. Langer, U. Erml H. Michel
Date
:
02 Sep 15 (Deposition) - 13 Jan 16 (Release) - 27 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,K,L,M,N,O,P,Q
Biol. Unit 1: A,B,C,N (1x)
Biol. Unit 2: D,E,F,O (1x)
Biol. Unit 3: G,H,I,P (1x)
Biol. Unit 4: K,L,M,Q (1x)
Keywords
:
Oxidoreductase, Cbb3-Cytochrome C Oxidase, Pseudomonas_stutzeri
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Buschmann, E. Warkentin, H. Xie, J. D. Langer, U. Ermler, H. Michel
The Structure Of Cbb3 Cytochrome Oxidase Provides Insights Into Proton Pumping.
Science V. 329 327 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: HEXACYANOFERRATE(3-) (FC6a)
3b: HEXACYANOFERRATE(3-) (FC6b)
3c: HEXACYANOFERRATE(3-) (FC6c)
3d: HEXACYANOFERRATE(3-) (FC6d)
4a: HEME C (HECa)
4b: HEME C (HECb)
4c: HEME C (HECc)
4d: HEME C (HECd)
4e: HEME C (HECe)
4f: HEME C (HECf)
4g: HEME C (HECg)
4h: HEME C (HECh)
4i: HEME C (HECi)
4j: HEME C (HECj)
4k: HEME C (HECk)
4l: HEME C (HECl)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
5d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
5e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
5f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
5g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
5h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
6a: HYDROGEN PEROXIDE (PEOa)
6b: HYDROGEN PEROXIDE (PEOb)
6c: HYDROGEN PEROXIDE (PEOc)
6d: HYDROGEN PEROXIDE (PEOd)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
FC6
1
Ligand/Ion
HEXACYANOFERRATE(3-)
4
HEC
3
Ligand/Ion
HEME C
5
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
PEO
1
Ligand/Ion
HYDROGEN PEROXIDE
7
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(15, 15)
Info
All Sites
01: AD3 (SOFTWARE)
02: AD4 (SOFTWARE)
03: AD5 (SOFTWARE)
04: AD6 (SOFTWARE)
05: AD7 (SOFTWARE)
06: AD8 (SOFTWARE)
07: AD9 (SOFTWARE)
08: AE1 (SOFTWARE)
09: AE9 (SOFTWARE)
10: AF9 (SOFTWARE)
11: AG1 (SOFTWARE)
12: AG2 (SOFTWARE)
13: AG3 (SOFTWARE)
14: AG4 (SOFTWARE)
15: AG5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD3
SOFTWARE
GLU D:122 , TYR D:123 , TRP D:203 , VAL D:210 , TYR D:251 , HIS D:257 , HIS D:258 , LEU D:279 , SER D:283 , SER D:320 , GLY D:324 , PRO D:325 , MET D:327 , ALA D:328 , ASN D:333 , HIS D:337 , HIS D:345 , VAL D:346 , HEM D:502 , PEO D:506 , CA D:507 , SER E:102
binding site for residue HEM D 501
02
AD4
SOFTWARE
MET D:29 , GLY D:32 , VAL D:33 , ALA D:36 , ARG D:57 , HIS D:60 , VAL D:64 , ILE D:65 , GLU D:122 , TYR D:123 , ASP D:340 , ILE D:343 , VAL D:346 , HIS D:347 , ALA D:350 , LEU D:351 , TYR D:395 , ARG D:437 , GLY D:441 , PHE D:444 , HEM D:501 , CA D:507 , LYS E:103
binding site for residue HEM D 502
03
AD5
SOFTWARE
HIS D:207 , HIS D:257 , HIS D:258 , PEO D:506
binding site for residue CU D 503
04
AD6
SOFTWARE
SER D:119 , ALA D:124 , LEU D:126 , ASP D:131 , ASN D:179
binding site for residue CA D 504
05
AD7
SOFTWARE
MET D:273 , ILE D:329 , LYS D:330 , THR D:331 , TYR F:72
binding site for residue PO4 D 505
06
AD8
SOFTWARE
HIS D:207 , VAL D:210 , HIS D:258 , HEM D:501 , CU D:503
binding site for residue PEO D 506
07
AD9
SOFTWARE
ARG D:57 , GLU D:122 , HEM D:501 , HEM D:502 , SER E:102
binding site for residue CA D 507
08
AE1
SOFTWARE
TYR F:260 , GLY F:265 , GLN F:266 , GLN F:269 , ARG F:275 , ARG I:206 , PRO I:215 , SER I:263 , LEU I:264
binding site for residue FC6 F 403
09
AE9
SOFTWARE
ARG F:206 , PRO F:215 , SER F:263 , LEU F:264 , GLY I:265 , GLN I:266 , GLN I:269 , ARG I:275
binding site for residue FC6 I 401
10
AF9
SOFTWARE
PHE D:53 , LEU D:427 , TYR E:60 , GLU E:63 , GLY E:64 , VAL E:66 , GLY E:67 , CYS E:68 , HIS E:69 , THR E:105 , GLY E:106 , PRO E:107 , LEU E:109 , TYR E:116 , TRP E:120 , HIS E:121 , HIS E:124 , LEU E:125 , VAL E:132 , SER E:135 , MET E:137 , PRO E:138 , TYR E:140 , MET E:188 , ILE F:145
binding site for Di-peptide HEC E 301 and CYS E 65
11
AG1
SOFTWARE
PHE D:53 , LEU D:427 , GLU E:63 , CYS E:65 , VAL E:66 , GLY E:67 , HIS E:69 , LYS E:103 , ARG E:104 , THR E:105 , GLY E:106 , PRO E:107 , LEU E:109 , TYR E:116 , TRP E:120 , HIS E:121 , HIS E:124 , LEU E:125 , VAL E:132 , SER E:135 , MET E:137 , PRO E:138 , TYR E:140 , MET E:188 , ILE F:145
binding site for Di-peptide HEC E 301 and CYS E 68
12
AG2
SOFTWARE
ARG F:166 , ALA F:184 , ALA F:185 , MET F:186 , PRO F:187 , TRP F:189 , TYR F:229 , THR F:232 , ALA F:234 , VAL F:235 , CYS F:236 , HIS F:237 , LEU F:247 , GLY F:248 , ALA F:249 , PRO F:250 , TRP F:258 , ILE F:259 , TYR F:260 , LEU F:267 , THR F:270 , ILE F:271 , GLY F:277 , HEC F:402
binding site for Di-peptide HEC F 401 and CYS F 233
13
AG3
SOFTWARE
ARG F:166 , ALA F:184 , ALA F:185 , MET F:186 , PRO F:187 , TRP F:189 , THR F:232 , CYS F:233 , ALA F:234 , VAL F:235 , HIS F:237 , GLY F:238 , MET F:244 , LEU F:247 , GLY F:248 , ALA F:249 , PRO F:250 , TRP F:258 , ILE F:259 , TYR F:260 , LEU F:267 , THR F:270 , ILE F:271 , GLY F:277 , HEC F:402
binding site for Di-peptide HEC F 401 and CYS F 236
14
AG4
SOFTWARE
TYR E:116 , SER E:117 , PHE F:139 , TYR F:142 , SER F:144 , ILE F:145 , CYS F:146 , HIS F:147 , GLY F:156 , PRO F:158 , LEU F:160 , TRP F:165 , ARG F:166 , TRP F:167 , SER F:177 , ILE F:178 , ALA F:184 , GLY F:277 , GLN F:278 , MET F:279 , PRO F:280 , GLN F:282 , HEC F:401
binding site for Di-peptide HEC F 402 and CYS F 143
15
AG5
SOFTWARE
TYR E:116 , SER E:117 , CYS F:143 , SER F:144 , ILE F:145 , HIS F:147 , GLY F:148 , GLY F:156 , PHE F:157 , PRO F:158 , LEU F:160 , TRP F:165 , ARG F:166 , TRP F:167 , SER F:177 , ILE F:178 , ALA F:184 , GLY F:277 , GLN F:278 , MET F:279 , PRO F:280 , GLN F:282 , HEC F:401
binding site for Di-peptide HEC F 402 and CYS F 146
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (346 KB)
Header - Biol.Unit 1
Biol.Unit 2 (355 KB)
Header - Biol.Unit 2
Biol.Unit 3 (348 KB)
Header - Biol.Unit 3
Biol.Unit 4 (351 KB)
Header - Biol.Unit 4
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