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5DHS
Asym. Unit
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Asym.Unit (363 KB)
Biol.Unit 1 (354 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A NOVEL INHIBITOR
Authors
:
M. Gelin, J. Paoletti, L. Assairi, V. Huteau, S. Pochet, G. Labesse
Date
:
31 Aug 15 (Deposition) - 14 Sep 16 (Release) - 09 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tetrameric Nad Kinase, Transferase
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Paoletti, L. Assairi, M. Gelin, V. Huteau, M. A. Nahori, O. Dussurget, G. Labesse, S. Pochet
8-Thioalkyl-Adenosine Derivatives Inhibit Listeria Monocytogenes Nad Kinase Through A Novel Binding Mode.
Eur. J. Med. Chem. V. 124 1041 2016
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 5'-AZIDO-5'-DEOXY-8-[(2-{[2-(3-ETH... (5AGa)
1b: 5'-AZIDO-5'-DEOXY-8-[(2-{[2-(3-ETH... (5AGb)
1c: 5'-AZIDO-5'-DEOXY-8-[(2-{[2-(3-ETH... (5AGc)
1d: 5'-AZIDO-5'-DEOXY-8-[(2-{[2-(3-ETH... (5AGd)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: GLYCEROL (GOLa)
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No.
Name
Count
Type
Full Name
1
5AG
4
Ligand/Ion
5'-AZIDO-5'-DEOXY-8-[(2-{[2-(3-ETHYNYLPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]ADENOSINE
2
CIT
2
Ligand/Ion
CITRIC ACID
3
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:98 , TYR A:100 , HIS A:173 , PHE A:251 , PRO A:252 , PHE A:253
binding site for residue CIT A 301
2
AC2
SOFTWARE
LYS A:127 , ASP A:150 , LYS C:127 , ASP C:150 , TYR C:163
binding site for residue GOL A 302
3
AC3
SOFTWARE
LEU A:49 , ASN A:122 , GLU A:123 , ALA A:162 , TYR A:163 , SER A:166 , HIS A:223 , GLY C:131 , PRO C:132 , ARG C:148 , GLY C:149 , ASP C:150 , ALA C:185
binding site for residue 5AG A 303
4
AC4
SOFTWARE
VAL B:98 , TYR B:100 , HIS B:173 , SER B:175 , PRO B:252 , PHE B:253 , HOH B:403
binding site for residue CIT B 301
5
AC5
SOFTWARE
GLU B:123 , ALA B:162 , TYR B:163 , SER B:166 , HIS B:223 , GLY D:131 , PRO D:132 , GLY D:149 , ASP D:150 , ALA D:185
binding site for residue 5AG B 302
6
AC6
SOFTWARE
GLY A:131 , ARG A:148 , GLY A:149 , ASP A:150 , ALA A:185 , ASN C:122 , GLU C:123 , ALA C:162 , TYR C:163 , SER C:166 , ASP C:222 , HIS C:223
binding site for residue 5AG C 301
7
AC7
SOFTWARE
GLY B:131 , PRO B:132 , ARG B:148 , GLY B:149 , ASP B:150 , ALA B:185 , ASN D:122 , GLU D:123 , ALA D:162 , TYR D:163 , SER D:166 , HIS D:223 , HOH D:418
binding site for residue 5AG D 301
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Asymmetric Unit 1
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Asym.Unit (363 KB)
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