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5DDR
Biol. Unit 2
Info
Asym.Unit (98 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH CS+
Authors
:
A. Ren, D. J. Patel
Date
:
25 Aug 15 (Deposition) - 23 Dec 15 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Riboswitch, L-Glutamine, Bound-Form, Rna, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ren, Y. Xue, A. Peselis, A. Serganov, H. M. Al-Hashimi, D. J. Patel
Structural And Dynamic Basis For Low-Affinity, High-Selectivity Binding Of L-Glutamine By The Glutamine Riboswitch.
Cell Rep V. 13 1800 2015
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CESIUM ION (CSa)
1b: CESIUM ION (CSb)
1c: CESIUM ION (CSc)
1d: CESIUM ION (CSd)
1e: CESIUM ION (CSe)
1f: CESIUM ION (CSf)
1g: CESIUM ION (CSg)
2a: GLUTAMINE (GLNa)
2b: GLUTAMINE (GLNb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
4k: MAGNESIUM ION (MGk)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CS
-1
Ligand/Ion
CESIUM ION
2
GLN
1
Mod. Amino Acid
GLUTAMINE
3
K
-1
Ligand/Ion
POTASSIUM ION
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(18, 18)
Info
All Sites
01: AC4 (SOFTWARE)
02: AD6 (SOFTWARE)
03: AD7 (SOFTWARE)
04: AD8 (SOFTWARE)
05: AD9 (SOFTWARE)
06: AE1 (SOFTWARE)
07: AE2 (SOFTWARE)
08: AE3 (SOFTWARE)
09: AE4 (SOFTWARE)
10: AE5 (SOFTWARE)
11: AE6 (SOFTWARE)
12: AE7 (SOFTWARE)
13: AE8 (SOFTWARE)
14: AE9 (SOFTWARE)
15: AF1 (SOFTWARE)
16: AF2 (SOFTWARE)
17: AF3 (SOFTWARE)
18: AF4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
HOH B:206 , HOH B:286 , HOH B:290
binding site for residue K A 104
02
AD6
SOFTWARE
C B:1 , G B:22 , G B:23 , G B:54 , C B:58 , G B:59 , C B:60 , MG B:106 , HOH B:205 , HOH B:212 , HOH B:223 , HOH B:238
binding site for residue GLN B 101
03
AD7
SOFTWARE
A A:13 , HOH A:202 , C B:33
binding site for residue K B 102
04
AD8
SOFTWARE
U B:32 , G B:46 , K B:104 , HOH B:257 , HOH B:279 , HOH B:303 , HOH B:310
binding site for residue K B 103
05
AD9
SOFTWARE
G B:30 , G B:31 , U B:32 , K B:103 , HOH B:285 , HOH B:303
binding site for residue K B 104
06
AE1
SOFTWARE
C B:16 , HOH B:292 , HOH B:293
binding site for residue MG B 105
07
AE2
SOFTWARE
G B:54 , GLN B:101 , HOH B:205 , HOH B:212 , HOH B:221 , HOH B:223 , HOH B:231
binding site for residue MG B 106
08
AE3
SOFTWARE
G B:12 , A B:14 , HOH B:228 , HOH B:249 , HOH B:254 , HOH B:309
binding site for residue MG B 107
09
AE4
SOFTWARE
G B:18 , HOH B:202 , HOH B:269 , HOH B:283 , HOH B:288 , HOH B:311
binding site for residue MG B 108
10
AE5
SOFTWARE
G B:51 , HOH B:284 , HOH B:298
binding site for residue NA B 109
11
AE6
SOFTWARE
A B:25 , G B:26 , HOH B:235 , HOH B:273 , HOH B:282
binding site for residue NA B 110
12
AE7
SOFTWARE
A B:25 , G B:26 , HOH B:235 , HOH B:270 , HOH B:282
binding site for residue NA B 111
13
AE8
SOFTWARE
G B:26 , G B:51 , HOH B:284
binding site for residue NA B 112
14
AE9
SOFTWARE
HOH B:209 , HOH B:250
binding site for residue CS B 113
15
AF1
SOFTWARE
HOH B:232 , HOH B:266
binding site for residue CS B 114
16
AF2
SOFTWARE
G B:11
binding site for residue CS B 115
17
AF3
SOFTWARE
G B:12
binding site for residue CS B 116
18
AF4
SOFTWARE
LYS C:19 , LYS C:79 , HOH C:214
binding site for residue MG C 101
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (98 KB)
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