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5DDR
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH CS+
Authors
:
A. Ren, D. J. Patel
Date
:
25 Aug 15 (Deposition) - 23 Dec 15 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Riboswitch, L-Glutamine, Bound-Form, Rna, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ren, Y. Xue, A. Peselis, A. Serganov, H. M. Al-Hashimi, D. J. Patel
Structural And Dynamic Basis For Low-Affinity, High-Selectivity Binding Of L-Glutamine By The Glutamine Riboswitch.
Cell Rep V. 13 1800 2015
[
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Hetero Components
(5, 31)
Info
All Hetero Components
1a: CESIUM ION (CSa)
1b: CESIUM ION (CSb)
1c: CESIUM ION (CSc)
1d: CESIUM ION (CSd)
1e: CESIUM ION (CSe)
1f: CESIUM ION (CSf)
1g: CESIUM ION (CSg)
2a: GLUTAMINE (GLNa)
2b: GLUTAMINE (GLNb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
4k: MAGNESIUM ION (MGk)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CS
7
Ligand/Ion
CESIUM ION
2
GLN
2
Mod. Amino Acid
GLUTAMINE
3
K
7
Ligand/Ion
POTASSIUM ION
4
MG
11
Ligand/Ion
MAGNESIUM ION
5
NA
4
Ligand/Ion
SODIUM ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
C A:1 , G A:22 , G A:23 , G A:54 , C A:58 , G A:59 , C A:60 , MG A:107 , HOH A:201 , HOH A:254
binding site for residue GLN A 101
02
AC2
SOFTWARE
MG A:109 , HOH A:208 , HOH A:282
binding site for residue K A 102
03
AC3
SOFTWARE
CS A:113 , HOH A:206 , HOH A:208 , HOH A:282
binding site for residue K A 103
04
AC4
SOFTWARE
HOH B:206 , HOH B:286 , HOH B:290
binding site for residue K A 104
05
AC5
SOFTWARE
G A:30 , G A:31 , U A:32 , HOH A:240 , HOH A:249 , HOH A:259 , HOH A:293
binding site for residue K A 105
06
AC6
SOFTWARE
HOH A:217 , HOH A:219 , HOH A:264 , HOH A:265 , HOH A:305 , HOH A:310
binding site for residue MG A 106
07
AC7
SOFTWARE
G A:54 , GLN A:101 , HOH A:201 , HOH A:210 , HOH A:225 , HOH A:245 , HOH A:254
binding site for residue MG A 107
08
AC8
SOFTWARE
HOH A:247 , HOH A:258 , HOH A:276 , HOH A:289 , HOH A:307
binding site for residue MG A 108
09
AC9
SOFTWARE
K A:102 , HOH A:246 , HOH A:248 , HOH A:251 , HOH A:277 , HOH A:282 , HOH A:297 , HOH A:304
binding site for residue MG A 109
10
AD1
SOFTWARE
A A:29 , HOH A:218 , HOH A:242 , HOH A:253 , HOH A:286 , HOH A:309
binding site for residue MG A 110
11
AD2
SOFTWARE
HOH A:243 , HOH A:288 , HOH A:295 , HOH A:302 , HOH A:303
binding site for residue MG A 111
12
AD3
SOFTWARE
G A:11 , G A:12 , HOH A:213 , HOH A:238 , HOH A:268 , HOH A:276 , HOH A:298
binding site for residue CS A 112
13
AD4
SOFTWARE
G A:20 , C A:21 , K A:103 , HOH A:206 , HOH A:223 , HOH A:272
binding site for residue CS A 113
14
AD5
SOFTWARE
G A:46 , HOH A:255 , HOH A:259 , HOH A:284
binding site for residue CS A 114
15
AD6
SOFTWARE
C B:1 , G B:22 , G B:23 , G B:54 , C B:58 , G B:59 , C B:60 , MG B:106 , HOH B:205 , HOH B:212 , HOH B:223 , HOH B:238
binding site for residue GLN B 101
16
AD7
SOFTWARE
A A:13 , HOH A:202 , C B:33
binding site for residue K B 102
17
AD8
SOFTWARE
U B:32 , G B:46 , K B:104 , HOH B:257 , HOH B:279 , HOH B:303 , HOH B:310
binding site for residue K B 103
18
AD9
SOFTWARE
G B:30 , G B:31 , U B:32 , K B:103 , HOH B:285 , HOH B:303
binding site for residue K B 104
19
AE1
SOFTWARE
C B:16 , HOH B:292 , HOH B:293
binding site for residue MG B 105
20
AE2
SOFTWARE
G B:54 , GLN B:101 , HOH B:205 , HOH B:212 , HOH B:221 , HOH B:223 , HOH B:231
binding site for residue MG B 106
21
AE3
SOFTWARE
G B:12 , A B:14 , HOH B:228 , HOH B:249 , HOH B:254 , HOH B:309
binding site for residue MG B 107
22
AE4
SOFTWARE
G B:18 , HOH B:202 , HOH B:269 , HOH B:283 , HOH B:288 , HOH B:311
binding site for residue MG B 108
23
AE5
SOFTWARE
G B:51 , HOH B:284 , HOH B:298
binding site for residue NA B 109
24
AE6
SOFTWARE
A B:25 , G B:26 , HOH B:235 , HOH B:273 , HOH B:282
binding site for residue NA B 110
25
AE7
SOFTWARE
A B:25 , G B:26 , HOH B:235 , HOH B:270 , HOH B:282
binding site for residue NA B 111
26
AE8
SOFTWARE
G B:26 , G B:51 , HOH B:284
binding site for residue NA B 112
27
AE9
SOFTWARE
HOH B:209 , HOH B:250
binding site for residue CS B 113
28
AF1
SOFTWARE
HOH B:232 , HOH B:266
binding site for residue CS B 114
29
AF2
SOFTWARE
G B:11
binding site for residue CS B 115
30
AF3
SOFTWARE
G B:12
binding site for residue CS B 116
31
AF4
SOFTWARE
LYS C:19 , LYS C:79 , HOH C:214
binding site for residue MG C 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (98 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (47 KB)
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