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Asym. Unit
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Asym.Unit (92 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
MENIN IN COMPLEX WITH MI-352
Authors
:
J. Pollock, B. Dmitry, T. Cierpicki, J. Grembecka
Date
:
20 Aug 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Binding, Protein Binding-Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Borkin, J. Pollock, K. Kempinska, T. Purohit, X. Li, B. Wen, T. Zhao, H. Miao, S. Shukla, M. He, D. Sun, T. Cierpicki, J. Grembecka
Property Focused Structure-Based Optimization Of Small Molecule Inhibitors Of The Protein-Protein Interaction Between Menin And Mixed Lineage Leukemia (Mll).
J. Med. Chem. V. 59 892 2016
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: 1-[(2S)-2,3-DIHYDROXYPROPYL]-5-[(4... (58Pa)
2a: 1-[(2R)-2,3-DIHYDROXYPROPYL]-5-[(4... (6E6a)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
58P
1
Ligand/Ion
1-[(2S)-2,3-DIHYDROXYPROPYL]-5-[(4-{[6-(2,2,2-TRIFLUOROETHYL)THIENO[2,3-D]PYRIMIDIN-4-YL]AMINO}PIPERIDIN-1-YL)METHYL]-1H-INDOLE-2-CARBONITRILE
2
6E6
1
Ligand/Ion
1-[(2R)-2,3-DIHYDROXYPROPYL]-5-[(4-{[6-(2,2,2-TRIFLUOROETHYL)THIENO[2,3-D]PYRIMIDIN-4-YL]AMINO}PIPERIDIN-1-YL)METHYL]-1H-INDOLE-2-CARBONITRILE
3
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
4
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:75 , THR A:76 , TYR A:361 , PHE A:365 , HOH A:707 , HOH A:846 , HOH A:864
binding site for residue PG4 A 601
02
AC2
SOFTWARE
PRO A:12 , ARG A:14 , HOH A:804
binding site for residue SO4 A 602
03
AC3
SOFTWARE
TYR A:133 , PHE A:134 , ARG A:137 , LYS A:151
binding site for residue SO4 A 603
04
AC4
SOFTWARE
ARG A:332 , VAL A:334 , ARG A:335 , GLY A:401 , ALA A:403 , HOH A:734 , HOH A:1046
binding site for residue SO4 A 604
05
AC5
SOFTWARE
LYS A:377 , ARG A:446 , HOH A:957
binding site for residue SO4 A 605
06
AC6
SOFTWARE
PHE A:47 , GLY A:386 , GLN A:400 , HOH A:793 , HOH A:932 , HOH A:1029
binding site for residue DMS A 606
07
AC7
SOFTWARE
VAL A:185 , GLY A:190 , GLU A:191 , TYR A:227 , ARG A:229 , SER A:583
binding site for residue DMS A 607
08
AC8
SOFTWARE
LYS A:135 , TRP A:198
binding site for residue PG4 A 608
09
AC9
SOFTWARE
SER A:155 , 58P A:610 , 6E6 A:612 , DMS A:613 , HOH A:716
binding site for residue DMS A 609
10
AD1
SOFTWARE
SER A:155 , LEU A:177 , SER A:178 , ASP A:180 , HIS A:181 , ALA A:182 , PHE A:238 , TYR A:276 , MET A:278 , TYR A:319 , MET A:322 , TYR A:323 , GLY A:326 , TRP A:341 , GLU A:363 , GLU A:366 , DMS A:609 , 6E6 A:612 , DMS A:613 , HOH A:709 , HOH A:729 , HOH A:870 , HOH A:926 , HOH A:1010
binding site for residue 58P A 610
11
AD2
SOFTWARE
TYR A:268 , ASP A:269 , GLY A:271 , GLU A:274 , HOH A:728
binding site for residue PG4 A 611
12
AD3
SOFTWARE
SER A:155 , LEU A:177 , SER A:178 , ASP A:180 , HIS A:181 , ALA A:182 , PHE A:238 , TYR A:276 , MET A:278 , TYR A:319 , MET A:322 , TYR A:323 , GLY A:326 , TRP A:341 , GLU A:363 , GLU A:366 , DMS A:609 , 58P A:610 , DMS A:613 , HOH A:709 , HOH A:870 , HOH A:926
binding site for residue 6E6 A 612
13
AD4
SOFTWARE
SER A:155 , PHE A:238 , CYS A:241 , ALA A:242 , DMS A:609 , 58P A:610 , 6E6 A:612 , HOH A:716
binding site for residue DMS A 613
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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