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5D92
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (112 KB)
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(1)
Title
:
STRUCTURE OF A PHOSPHATIDYLINOSITOLPHOSPHATE (PIP) SYNTHASE FROM RENIBACTERIUM SALMONINARUM
Authors
:
O. B. Clarke, D. T. Tomasek, C. D. Jorge, M. Belcher Dufrisne, M. Kim, S. K. R. Rajashankar, W. A. Hendrickson, H. Santos, F. Mancia
Date
:
18 Aug 15 (Deposition) - 04 Nov 15 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Membrane Protein, Enzyme, Lipid Biosynthesis, Phosphatidylinositol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. B. Clarke, D. Tomasek, C. D. Jorge, M. B. Dufrisne, M. Kim, S. Banerjee, K. R. Rajashankar, L. Shapiro, W. A. Hendrickson, H. Santos, F. Mancia
Structural Basis For Phosphatidylinositol-Phosphate Biosynthesis.
Nat Commun V. 6 8505 2015
[
close entry info
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Hetero Components
(3, 45)
Info
All Hetero Components
1a: 5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)... (58Aa)
1b: 5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)... (58Ab)
1c: 5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)... (58Ac)
1d: 5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)... (58Ad)
2a: OCTADECANE (8K6a)
2aa: OCTADECANE (8K6aa)
2ab: OCTADECANE (8K6ab)
2ac: OCTADECANE (8K6ac)
2ad: OCTADECANE (8K6ad)
2ae: OCTADECANE (8K6ae)
2af: OCTADECANE (8K6af)
2ag: OCTADECANE (8K6ag)
2b: OCTADECANE (8K6b)
2c: OCTADECANE (8K6c)
2d: OCTADECANE (8K6d)
2e: OCTADECANE (8K6e)
2f: OCTADECANE (8K6f)
2g: OCTADECANE (8K6g)
2h: OCTADECANE (8K6h)
2i: OCTADECANE (8K6i)
2j: OCTADECANE (8K6j)
2k: OCTADECANE (8K6k)
2l: OCTADECANE (8K6l)
2m: OCTADECANE (8K6m)
2n: OCTADECANE (8K6n)
2o: OCTADECANE (8K6o)
2p: OCTADECANE (8K6p)
2q: OCTADECANE (8K6q)
2r: OCTADECANE (8K6r)
2s: OCTADECANE (8K6s)
2t: OCTADECANE (8K6t)
2u: OCTADECANE (8K6u)
2v: OCTADECANE (8K6v)
2w: OCTADECANE (8K6w)
2x: OCTADECANE (8K6x)
2y: OCTADECANE (8K6y)
2z: OCTADECANE (8K6z)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
58A
4
Ligand/Ion
5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)-OCTADEC-9-ENOYLOXY]PROPOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]CYTIDINE
2
8K6
33
Ligand/Ion
OCTADECANE
3
MG
8
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU D:44
binding site for residue 8K6 D 301
02
AC2
SOFTWARE
PRO D:48
binding site for residue 8K6 D 302
03
AC3
SOFTWARE
THR D:114
binding site for residue 8K6 D 303
04
AC4
SOFTWARE
SER D:27 , 8K6 D:307
binding site for residue 8K6 D 304
05
AC5
SOFTWARE
VAL D:61 , SER D:65 , 8K6 D:307
binding site for residue 8K6 D 306
06
AC6
SOFTWARE
VAL D:26 , 8K6 D:304 , 8K6 D:306
binding site for residue 8K6 D 307
07
AC7
SOFTWARE
ASN D:3
binding site for residue 8K6 D 309
08
AC8
SOFTWARE
ASP D:66 , ASP D:87 , ASP D:91 , MG D:314 , 58A D:315
binding site for residue MG D 313
09
AC9
SOFTWARE
ASP D:66 , ASP D:69 , GLY D:70 , ASP D:87 , MG D:313 , 58A D:315
binding site for residue MG D 314
10
AD1
SOFTWARE
PRO D:28 , ASP D:29 , THR D:32 , THR D:60 , VAL D:63 , PHE D:64 , ASP D:66 , ILE D:67 , ASP D:69 , GLY D:70 , ALA D:73 , ARG D:74 , ARG D:78 , GLU D:79 , GLY D:80 , GLY D:83 , ALA D:84 , LEU D:86 , ASP D:87 , ARG D:150 , VAL D:155 , LEU D:166 , MG D:313 , MG D:314
binding site for residue 58A D 315
11
AD2
SOFTWARE
ILE A:104
binding site for residue 8K6 A 301
12
AD3
SOFTWARE
LEU A:44 , MET A:49
binding site for residue 8K6 A 302
13
AD4
SOFTWARE
ILE A:121
binding site for residue 8K6 A 303
14
AD5
SOFTWARE
VAL A:61
binding site for residue 8K6 A 304
15
AD6
SOFTWARE
VAL A:26 , SER A:65
binding site for residue 8K6 A 305
16
AD7
SOFTWARE
VAL A:179
binding site for residue 8K6 A 306
17
AD8
SOFTWARE
TRP A:171
binding site for residue 8K6 A 307
18
AD9
SOFTWARE
ASP A:66 , ASP A:87 , ASP A:91 , MG A:310 , 58A A:311
binding site for residue MG A 309
19
AE1
SOFTWARE
ASP A:66 , ASP A:69 , ASP A:87 , MG A:309 , 58A A:311
binding site for residue MG A 310
20
AE2
SOFTWARE
PRO A:28 , ASP A:29 , THR A:32 , THR A:56 , THR A:60 , VAL A:63 , PHE A:64 , ASP A:66 , ILE A:67 , ASP A:69 , GLY A:70 , ALA A:73 , ARG A:74 , GLU A:79 , GLY A:80 , GLY A:83 , ALA A:84 , ASP A:87 , ARG A:150 , SER A:151 , VAL A:155 , LEU A:166 , MG A:309 , MG A:310 , 58A B:309
binding site for residue 58A A 311
21
AE3
SOFTWARE
SER B:65
binding site for residue 8K6 B 301
22
AE4
SOFTWARE
ILE C:121
binding site for residue 8K6 B 302
23
AE5
SOFTWARE
PRO B:16
binding site for residue 8K6 B 306
24
AE6
SOFTWARE
ASP B:66 , ASP B:87 , ASP B:91 , MG B:308 , 58A B:309
binding site for residue MG B 307
25
AE7
SOFTWARE
ASP B:66 , ASP B:69 , GLY B:70 , ASP B:87 , MG B:307 , 58A B:309
binding site for residue MG B 308
26
AE8
SOFTWARE
58A A:311 , SER B:-1 , GLY B:0 , ASP B:29 , THR B:32 , PHE B:53 , THR B:60 , VAL B:63 , PHE B:64 , ASP B:66 , ILE B:67 , ASP B:69 , GLY B:70 , ALA B:73 , ARG B:74 , ARG B:78 , GLU B:79 , GLY B:83 , ALA B:84 , ASP B:87 , ARG B:150 , SER B:151 , VAL B:155 , MG B:307 , MG B:308
binding site for residue 58A B 309
27
AE9
SOFTWARE
8K6 C:302
binding site for residue 8K6 C 301
28
AF1
SOFTWARE
TRP C:54 , 8K6 C:301
binding site for residue 8K6 C 302
29
AF2
SOFTWARE
LEU C:44
binding site for residue 8K6 C 304
30
AF3
SOFTWARE
VAL C:26 , 8K6 C:307
binding site for residue 8K6 C 306
31
AF4
SOFTWARE
VAL C:34 , SER C:65 , 8K6 C:306
binding site for residue 8K6 C 307
32
AF5
SOFTWARE
ASP C:66 , ASP C:87 , ASP C:91 , MG C:309 , 58A C:310
binding site for residue MG C 308
33
AF6
SOFTWARE
ASP C:66 , ASP C:69 , GLY C:70 , ASP C:87 , MG C:308 , 58A C:310
binding site for residue MG C 309
34
AF7
SOFTWARE
PRO C:28 , ASP C:29 , THR C:32 , THR C:60 , VAL C:63 , PHE C:64 , ASP C:66 , ILE C:67 , ASP C:69 , GLY C:70 , ALA C:73 , ARG C:74 , GLU C:79 , GLY C:80 , GLY C:83 , ALA C:84 , ASP C:87 , ARG C:150 , SER C:151 , VAL C:155 , VAL C:159 , LEU C:166 , MG C:308 , MG C:309
binding site for residue 58A C 310
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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CATH Domains
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Pfam Domains
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