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5D7D
Biol. Unit 1
Info
Asym.Unit (154 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ATP BINDING DOMAIN OF S. AUREUS GYRB COMPLEXED WITH A LIGAND
Authors
:
J. Zhang, Q. Yang, J. B. Cross, J. A. C. Romero, M. D. Ryan, B. Lippa, R. E. D O. A. Andersen, J. Barker, R. K. Cheng, J. Kahmann, B. Felicetti, M. Woo C. Scheich
Date
:
13 Aug 15 (Deposition) - 11 Nov 15 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Dna Gyrase, Gyrb, Ligand, Structure-Based Design, Isomerase-Isomerase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, Q. Yang, J. A. Romero, J. Cross, B. Wang, K. M. Poutsiaka, F. Epie, D. Bevan, Y. Wu, T. Moy, A. Daniel, B. Chamberlain, N. Carter, J. Shotwell, A. Arya, V. Kumar, J. Silverman, K. Nguyen, C. A. Metcalf, D. Ryan, B. Lippa, R. E. Dolle
Discovery Of Indazole Derivatives As A Novel Class Of Bacterial Gyrase B Inhibitors.
Acs Med. Chem. Lett. V. 6 1080 2015
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 7-PROPYL-3-[2-(PYRIDIN-3-YL)-1,3-T... (57Xa)
1b: 7-PROPYL-3-[2-(PYRIDIN-3-YL)-1,3-T... (57Xb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
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No.
Name
Count
Type
Full Name
1
57X
1
Ligand/Ion
7-PROPYL-3-[2-(PYRIDIN-3-YL)-1,3-THIAZOL-5-YL]-1,7-DIHYDRO-6H-PYRAZOLO[3,4-B]PYRIDIN-6-ONE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:81 , HIS A:143 , LYS A:170 , THR A:171 , MPD A:302 , HOH A:413
binding site for residue MPD A 301
2
AC2
SOFTWARE
TYR A:141 , HIS A:143 , MPD A:301
binding site for residue MPD A 302
3
AC3
SOFTWARE
VAL A:88 , ARG A:144 , ASN A:145 , HOH A:523
binding site for residue CL A 303
4
AC4
SOFTWARE
ASP A:57 , MG A:305 , HOH A:446 , HOH A:516
binding site for residue MG A 304
5
AC5
SOFTWARE
ASP A:53 , ASN A:54 , ASP A:57 , MG A:304 , MG A:306 , HOH A:446 , HOH A:469 , HOH A:499 , HOH A:531
binding site for residue MG A 305
6
AC6
SOFTWARE
GLU A:50 , MG A:305 , HOH A:469 , HOH A:499 , HOH A:521 , HOH A:531
binding site for residue MG A 306
7
AC7
SOFTWARE
ASN A:54 , SER A:55 , GLU A:58 , VAL A:79 , ASP A:81 , ARG A:84 , GLY A:85 , ILE A:86 , PRO A:87 , ARG A:144 , THR A:173 , ILE A:175 , HOH A:442
binding site for residue 57X A 307
8
AC8
SOFTWARE
LYS A:163 , HOH A:450 , HOH A:475 , ASP B:53 , ASP B:57
binding site for residue MG A 300
9
AD6
SOFTWARE
THR A:185 , ASN B:54 , SER B:55 , GLU B:58 , VAL B:79 , ASP B:81 , ARG B:84 , GLY B:85 , ILE B:86 , PRO B:87 , ARG B:144 , THR B:173 , ILE B:175 , HOH B:435 , HOH B:502
binding site for residue 57X B 308
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Show PDB file:
Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
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