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5D4D
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (595 KB)
Biol.Unit 2 (585 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS PRODUCT COMPLEX FOR TRANSCRIPTION INITIATION WITH NAD AND CTP
Authors
:
Y. Zhang, R. H. Ebright
Date
:
07 Aug 15 (Deposition) - 06 Jul 16 (Release) - 03 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,K,L,M,N,O,P,R,S
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: K,L,M,N,O,P,R,S (1x)
Keywords
:
Rna Polymerase, Transcription Initiation, Bacterial, Ncin, Non- Canonical Initiating Nucleotide, Primer-Dependent Initiation, Dna, Single-Stranded, Dna-Directed Rna Polymerases, Gene Expression Regulation, Promoter Regions, Genetic, Protein Conformation, Sigma Factor, Transcription-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Bird, Y. Zhang, Y. Tian, N. Panova, I. Barvik, L. Greene, M. Liu, B. Buckley, L. Krasny, J. K. Lee, C. D. Kaplan, R. H. Ebright, B. E. Nickels
The Mechanism Of Rna 5' Capping With Nad(+), Nadh And Desphospho-Coa.
Nature V. 535 444 2016
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: ADENOSINE-5'-MONOPHOSPHATE (Aa)
3a: CYTIDINE-5'-TRIPHOSPHATE (CTPa)
3b: CYTIDINE-5'-TRIPHOSPHATE (CTPb)
2a: CYTIDINE-5'-MONOPHOSPHATE (Ca)
2b: CYTIDINE-5'-MONOPHOSPHATE (Cb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A
1
Ligand/Ion
ADENOSINE-5'-MONOPHOSPHATE
2
C
2
Ligand/Ion
CYTIDINE-5'-MONOPHOSPHATE
3
CTP
2
Ligand/Ion
CYTIDINE-5'-TRIPHOSPHATE
4
MG
10
Ligand/Ion
MAGNESIUM ION
5
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
ZN
4
Ligand/Ion
ZINC ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:183 , ASP B:191 , LEU B:192 , ASP B:193
binding site for residue MG B 2001
02
AC2
SOFTWARE
CYS D:1112 , CYS D:1194 , CYS D:1201 , CYS D:1204
binding site for residue ZN D 2001
03
AC3
SOFTWARE
CYS D:58 , CYS D:60 , CYS D:73 , CYS D:76
binding site for residue ZN D 2002
04
AC4
SOFTWARE
ASP D:739 , ASP D:741 , ASP D:743 , C D:2005
binding site for residue MG D 2003
05
AC5
SOFTWARE
LEU D:839 , LYS D:840 , HOH D:2101
binding site for residue MG D 2004
06
AC6
SOFTWARE
LYS C:838 , LYS C:846 , ARG D:704 , ASP D:741 , ASP D:743 , MG D:2003 , HOH D:2237 , HOH D:2239 , DG G:15
binding site for residue C D 2005
07
AC7
SOFTWARE
SER C:878 , ARG C:879 , ARG D:1029 , MG D:2007 , HOH D:2118 , HOH D:2139
binding site for residue CTP D 2006
08
AC8
SOFTWARE
ASP D:739 , CTP D:2006
binding site for residue MG D 2007
09
AC9
SOFTWARE
ALA F:292 , GLY F:296 , TRP F:299
binding site for residue MG F 2001
10
AD1
SOFTWARE
ASP L:183 , ASP L:191 , LEU L:192 , ASP L:193
binding site for residue MG L 2001
11
AD2
SOFTWARE
SER M:878 , ARG M:879 , HOH M:1368 , ARG N:1029 , MG N:2006
binding site for residue CTP M 1201
12
AD3
SOFTWARE
CYS N:1112 , CYS N:1194 , CYS N:1201 , CYS N:1204
binding site for residue ZN N 2001
13
AD4
SOFTWARE
CYS N:58 , CYS N:60 , CYS N:73 , CYS N:76
binding site for residue ZN N 2002
14
AD5
SOFTWARE
ASP N:739 , ASP N:741 , ASP N:743 , C N:2005
binding site for residue MG N 2003
15
AD6
SOFTWARE
HOH L:2103 , LYS N:840 , HOH N:2101 , HOH N:2117 , HOH N:2149
binding site for residue MG N 2004
16
AD7
SOFTWARE
LYS M:838 , LYS M:846 , ARG N:704 , ASP N:741 , ASP N:743 , MG N:2003 , DG R:15 , DT R:16 , A R:101
binding site for residue C N 2005
17
AD8
SOFTWARE
CTP M:1201 , HOH M:1368 , ASP N:739 , HOH N:2242
binding site for residue MG N 2006
18
AD9
SOFTWARE
ALA P:292 , GLY P:296 , TRP P:299
binding site for residue MG P 2001
19
AE1
SOFTWARE
LYS M:838 , HIS M:999 , C N:2005 , DT R:16 , DA R:17 , HOH R:201
binding site for residue A R 101
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (595 KB)
Header - Biol.Unit 1
Biol.Unit 2 (585 KB)
Header - Biol.Unit 2
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