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5D2R
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
INHIBITOR BOUND CELL SHAPE DETERMINANT PROTEIN CSD4 FROM HELICOBACTER PYLORI
Authors
:
A. C. Chan, M. E. Murphy
Date
:
06 Aug 15 (Deposition) - 20 Jan 16 (Release) - 27 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mixed Alpha Beta Sandwich, Carboxypeptidase, M14, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Liu, E. Frirdich, J. A. Taylor, A. C. Chan, K. M. Blair, J. Vermeulen, R. Ha, M. E. Murphy, N. R. Salama, E. C. Gaynor, M. E. Tanner
A Bacterial Cell Shape-Determining Inhibitor.
Acs Chem. Biol. V. 11 981 2016
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: (2R,6R)-2-{[(R)-[(3R)-3-(ACETYLAMI... (56Wa)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
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No.
Name
Count
Type
Full Name
1
56W
1
Ligand/Ion
(2R,6R)-2-{[(R)-[(3R)-3-(ACETYLAMINO)-3-CARBOXYPROPYL](HYDROXY)PHOSPHORYL]METHYL}-6-AMINOHEPTANEDIOIC ACID
2
IOD
19
Ligand/Ion
IODIDE ION
3
ZN
3
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:46 , GLU A:49 , HIS A:128 , 56W A:523
binding site for residue ZN A 501
02
AC2
SOFTWARE
HIS A:62 , ASP A:254
binding site for residue ZN A 502
03
AC3
SOFTWARE
ASP A:157 , GLU A:158
binding site for residue ZN A 503
04
AC4
SOFTWARE
ASN A:267 , LYS A:329
binding site for residue IOD A 506
05
AC5
SOFTWARE
GLN A:198
binding site for residue IOD A 511
06
AC6
SOFTWARE
SER A:260
binding site for residue IOD A 512
07
AC7
SOFTWARE
LYS A:325
binding site for residue IOD A 513
08
AC8
SOFTWARE
SER A:64
binding site for residue IOD A 514
09
AC9
SOFTWARE
LYS A:163
binding site for residue IOD A 515
10
AD1
SOFTWARE
LYS A:319
binding site for residue IOD A 518
11
AD2
SOFTWARE
LYS A:404
binding site for residue IOD A 520
12
AD3
SOFTWARE
HOH A:868
binding site for residue IOD A 521
13
AD4
SOFTWARE
GLN A:46 , GLU A:49 , ARG A:86 , ASN A:93 , ARG A:94 , HIS A:126 , HIS A:128 , ASP A:129 , GLY A:130 , GLY A:131 , TRP A:148 , MET A:203 , ALA A:206 , LEU A:207 , THR A:208 , ALA A:220 , GLU A:222 , LYS A:225 , ZN A:501 , HOH A:610 , HOH A:622 , HOH A:671 , HOH A:672 , HOH A:697 , HOH A:753
binding site for residue 56W A 523
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (224 KB)
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