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5D1K
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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Title
:
CRYSTAL STRUCTURE OF UBCH5B IN COMPLEX WITH THE RING-U5BR FRAGMENT OF AO7
Authors
:
Y. -H. Liang, S. Li, A. M. Weissman, X. Ji
Date
:
08 Oct 13 (Deposition) - 28 Oct 15 (Release) - 30 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ubiquitin Conjugating Enzyme (E2), Ubiquitin Ligase (E3), Ring Finger, Ubiquitination, Ubiquitin, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Li, Y. H. Liang, J. Mariano, M. B. Metzger, D. K. Stringer, V. A. Hristova, J. Li, P. A. Randazzo, Y. C. Tsai, X. Ji, A. M. Weissman
Insights Into Ubiquitination From The Unique Clamp-Like Binding Of The Ring E3 Ao7 To The E2 Ubch5B.
J. Biol. Chem. V. 290 30225 2015
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
2a: OXALATE ION (OXLa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
OXL
1
Ligand/Ion
OXALATE ION
3
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:137 , TRP A:141 , OXL A:203
binding site for residue EDO A 201
2
AC2
SOFTWARE
ARG A:72 , SER A:80 , TRP A:141 , TYR A:145 , OXL A:203
binding site for residue PEG A 202
3
AC3
SOFTWARE
TRP A:141 , LYS A:144 , TYR A:145 , EDO A:201 , PEG A:202 , HOH A:301
binding site for residue OXL A 203
4
AC4
SOFTWARE
CYS B:135 , CYS B:138 , HIS B:158 , CYS B:161
binding site for residue ZN B 301
5
AC5
SOFTWARE
CYS B:153 , HIS B:155 , CYS B:198 , CYS B:201
binding site for residue ZN B 302
6
AC6
SOFTWARE
THR B:149 , LYS B:150 , THR B:151 , PRO B:152 , VAL B:206 , GLU B:247 , ARG B:248
binding site for residue EDO B 303
7
AC7
SOFTWARE
ASN A:41 , GLN A:46 , MET A:147 , LYS B:150 , TYR B:154 , ARG B:248
binding site for residue EDO B 304
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Exons
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Asymmetric Unit 1
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