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5COB
Asym. Unit
Info
Asym.Unit (506 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (251 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IRIDOID SYNTHASE IN COMPLEX WITH NADP+ AND 8-OXOGERANIAL AT 2.65-ANGSTROM RESOLUTION
Authors
:
L. Qin, Y. Zhu, Z. Ding, X. Zhang, S. Ye, R. Zhang
Date
:
20 Jul 15 (Deposition) - 09 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Sdr, P5Br, Rossmann Fold, 1-4 Addition, Oxidoreductase
(Keyword Search:
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Reference
:
L. Qin, Y. Zhu, Z. Ding, X. Zhang, S. Ye, R. Zhang
Structure Of Iridoid Synthase In Complex With Nadp(+)/8-Oxogeranial Reveals The Structural Basis Of Its Substrate Specificity.
J. Struct. Biol. V. 194 224 2016
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
1d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
2c: TETRAETHYLENE GLYCOL (PG4c)
2d: TETRAETHYLENE GLYCOL (PG4d)
3a: (2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENE... (XOGa)
3b: (2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENE... (XOGb)
3c: (2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENE... (XOGc)
3d: (2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENE... (XOGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
3
XOG
4
Ligand/Ion
(2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENEDIAL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:36 , THR A:38 , GLY A:39 , ILE A:40 , ALA A:65 , ARG A:66 , ARG A:67 , CYS A:83 , ASP A:84 , VAL A:85 , VAL A:107 , SER A:108 , TRP A:109 , ILE A:110 , GLN A:142 , THR A:143 , TYR A:178 , PRO A:201 , ALA A:202 , VAL A:204 , SER A:211 , MET A:212 , MET A:213 , XOG A:1002 , PG4 A:1003 , HOH A:1102 , HOH A:1107 , HOH A:1108 , HOH A:1128 , HOH A:1129
binding site for residue NAP A 1001
02
AC2
SOFTWARE
GLY A:144 , ILE A:145 , LYS A:146 , PHE A:149 , TYR A:178 , MET A:213 , PHE A:342 , ILE A:345 , ALA A:346 , SER A:349 , NAP A:1001
binding site for residue XOG A 1002
03
AC3
SOFTWARE
LYS A:146 , GLY A:150 , PHE A:152 , ASN A:176 , PHE A:177 , TYR A:178 , NAP A:1001
binding site for residue PG4 A 1003
04
AC4
SOFTWARE
GLY B:36 , THR B:38 , GLY B:39 , ILE B:40 , ALA B:65 , ARG B:66 , ARG B:67 , CYS B:83 , ASP B:84 , VAL B:85 , VAL B:107 , SER B:108 , TRP B:109 , GLN B:142 , THR B:143 , TYR B:178 , PRO B:201 , ALA B:202 , VAL B:204 , SER B:211 , MET B:212 , MET B:213 , XOG B:1002 , PG4 B:1003 , HOH B:1104 , HOH B:1117 , HOH B:1132
binding site for residue NAP B 1001
05
AC5
SOFTWARE
GLY B:144 , ILE B:145 , LYS B:146 , PHE B:149 , TYR B:178 , MET B:213 , PHE B:342 , ILE B:345 , ALA B:346 , SER B:349 , NAP B:1001
binding site for residue XOG B 1002
06
AC6
SOFTWARE
GLU B:113 , LYS B:146 , GLY B:150 , PHE B:152 , ASN B:176 , PHE B:177 , TYR B:178 , NAP B:1001
binding site for residue PG4 B 1003
07
AC7
SOFTWARE
GLY C:36 , THR C:38 , GLY C:39 , ILE C:40 , ALA C:65 , ARG C:66 , ARG C:67 , CYS C:83 , ASP C:84 , VAL C:85 , VAL C:107 , SER C:108 , TRP C:109 , GLN C:142 , THR C:143 , PHE C:177 , TYR C:178 , PRO C:201 , ALA C:202 , VAL C:204 , SER C:211 , MET C:212 , MET C:213 , XOG C:1002 , PG4 C:1003 , HOH C:1102 , HOH C:1108 , HOH C:1119
binding site for residue NAP C 1001
08
AC8
SOFTWARE
GLY C:144 , ILE C:145 , LYS C:146 , PHE C:149 , TYR C:178 , MET C:213 , PHE C:342 , ILE C:345 , SER C:349 , NAP C:1001
binding site for residue XOG C 1002
09
AC9
SOFTWARE
GLU C:113 , LYS C:146 , GLY C:150 , PHE C:152 , ASN C:176 , PHE C:177 , TYR C:178 , MET C:213 , NAP C:1001
binding site for residue PG4 C 1003
10
AD1
SOFTWARE
GLY D:36 , THR D:38 , GLY D:39 , ILE D:40 , ALA D:65 , ARG D:66 , ARG D:67 , CYS D:83 , ASP D:84 , VAL D:85 , VAL D:107 , SER D:108 , TRP D:109 , GLN D:142 , THR D:143 , TYR D:178 , PRO D:201 , ALA D:202 , VAL D:204 , SER D:211 , MET D:212 , MET D:213 , XOG D:1002 , PG4 D:1003 , HOH D:1101 , HOH D:1114 , HOH D:1119
binding site for residue NAP D 1001
11
AD2
SOFTWARE
GLY D:144 , ILE D:145 , LYS D:146 , PHE D:149 , TYR D:178 , MET D:213 , ILE D:345 , ALA D:346 , SER D:349 , NAP D:1001
binding site for residue XOG D 1002
12
AD3
SOFTWARE
TRP D:109 , GLU D:113 , LYS D:146 , GLY D:150 , PHE D:152 , ASN D:176 , PHE D:177 , TYR D:178 , MET D:213 , NAP D:1001
binding site for residue PG4 D 1003
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Asym.Unit (506 KB)
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