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5CNA
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
REFINED STRUCTURE OF CONCANAVALIN A COMPLEXED WITH ALPHA-METHYL-D-MANNOPYRANOSIDE AT 2.0 ANGSTROMS RESOLUTION AND COMPARISON WITH THE SACCHARIDE-FREE STRUCTURE
Authors
:
J. H. Naismith, C. Emmerich, J. Habash, S. J. Harrop, J. R. Helliwell, W. N. Hunter, J. Raftery, A. J. Kalb(Gilboa), J. Yariv
Date
:
11 Feb 94 (Deposition) - 31 May 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lectin(Agglutinin)
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Naismith, C. Emmerich, J. Habash, S. J. Harrop, J. R. Helliwell, W. N. Hunter, J. Raftery, A. J. Kalb, J. Yariv
Refined Structure Of Concanavalin A Complexed With Methyl Alpha-D-Mannopyranoside At 2. 0 A Resolution And Comparison With The Saccharide-Free Structure.
Acta Crystallogr. , Sect. D V. 50 847 1994
(for further references see the
PDB file header
)
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
3a: O1-METHYL-MANNOSE (MMAa)
3b: O1-METHYL-MANNOSE (MMAb)
3c: O1-METHYL-MANNOSE (MMAc)
3d: O1-METHYL-MANNOSE (MMAd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MMA
4
Ligand/Ion
O1-METHYL-MANNOSE
4
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , GLY A:227 , ARG A:228 , HOH A:286 , HOH A:295 , GLY B:224 , HOH B:300
BINDING SITE FOR RESIDUE MMA A 238
02
AC2
SOFTWARE
GLY A:224 , HOH A:289 , HOH A:345 , ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , GLY B:227 , ARG B:228 , HOH B:242
BINDING SITE FOR RESIDUE MMA B 238
03
AC3
SOFTWARE
TYR C:12 , ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , ARG C:228 , HOH C:255 , HOH C:321 , HOH C:332
BINDING SITE FOR RESIDUE MMA C 238
04
AC4
SOFTWARE
ASN D:14 , ASN D:69 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , ARG D:228 , HOH D:292 , HOH D:345
BINDING SITE FOR RESIDUE MMA D 238
05
AC5
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:245 , HOH A:246
BINDING SITE FOR RESIDUE MN A 239
06
AC6
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:247 , HOH A:248
BINDING SITE FOR RESIDUE CA A 240
07
AC7
SOFTWARE
ALA A:236 , ALA B:236 , HOH B:306
BINDING SITE FOR RESIDUE CL A 241
08
AC8
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:254 , HOH B:255
BINDING SITE FOR RESIDUE MN B 239
09
AC9
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:253 , HOH B:256
BINDING SITE FOR RESIDUE CA B 240
10
BC1
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:243 , HOH C:244
BINDING SITE FOR RESIDUE MN C 239
11
BC2
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:245 , HOH C:246
BINDING SITE FOR RESIDUE CA C 240
12
BC3
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:252 , HOH D:254
BINDING SITE FOR RESIDUE MN D 239
13
BC4
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:255 , HOH D:256
BINDING SITE FOR RESIDUE CA D 240
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d5cnaa_ (A:)
1b: SCOP_d5cnab_ (B:)
1c: SCOP_d5cnac_ (C:)
1d: SCOP_d5cnad_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d5cnaa_
A:
1b
d5cnab_
B:
1c
d5cnac_
C:
1d
d5cnad_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_5cnaA00 (A:1-237)
1b: CATH_5cnaB00 (B:1-237)
1c: CATH_5cnaC00 (C:1-237)
1d: CATH_5cnaD00 (D:1-237)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
5cnaA00
A:1-237
1b
5cnaB00
B:1-237
1c
5cnaC00
C:1-237
1d
5cnaD00
D:1-237
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (168 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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